Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02135 ATGACGGAACGAATTAAGTTCAGCGTATTATGCAGCTTATTTACATGGACACAACGAACCAAATCACCAGCGAAGAAACGCGCAAAGTTCCGGAAGTTTCTCGATTCTTTCTGCACCGATCGTAACTACTTCCCTGCAATTCGACTCATTCTTCCTAATCTCGATCGTGAACGTGGTTCCTATGGTCTCAAAGAATCCGTTCTCGCTACTTCACTCATCGATGCTCTTGGTTTGTCCAAAGACTCGCACGACGCTGTTCGCCTTATCAATTGGCGGAAAGGTGGTTCGAAAACCGGTGCTAATGCCGGTAATTTCGCCCTTGTCGCCGCCGAGGTGCTGCAGCTTAGGCAAGGTACTGCTTCCGGTGGATTGACAATAAAGGAGTTGAATGACTTGCTTGATCAATTGGCTTCGAGTGAAAATAGGGGTGAGAAGACTTTGGTTCTTTCAACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATTTAAAGCTGGGATTTAGTGAAAAAAGCATTTTTCATGAATTCCATCCAGATGCTGAAGACTTGTTTAATGTTACGTGTGACTTAAAATTAGTTTGTGAAAAGCTAAGGGATCGGAACCAACGTCATAAGCGGCAGGATATTGAAATTGGAAAAGCTGTGCGTCCTCAATTAGCTAAGAGAGTTGCTAACGCAGCTGAAGCATGGAAGAAGCTTCATGGTAAGGAAGTGGTTGCTGAGTGCAAATTTGATGGTGATCGCATTCAAATTCATAAAAATGGAACAGAGATACATTTCTTCTCAAGGAACTTTATTGATCATTCTGAATATGCACATGGCATGTCGGAAGTCATAATTCAAAACATTCTTGTGGATAGATGCATACTTGATGGTGAAATGTTGGTCTGGGATACATCCTTGAATCGTTTTGCTGAGTTTGGCTCTAATCAGGAAATAGCCAAGGCAGCAAGGGATGGGCTTGAGAGTAATAGACAGTTATGCTACGTTGCATTTGACATCCTTTATTTTGGAGATACTAGTGTAATTCACCAAACATTGAAGGAGCGGCATGAGATTCTACGTAAAGTTGTGAAGCCATTAAAAGGTCGTTTGGAAATTTTACTACCTAATGGTGGTATCAACAGTCATTGGTCTTCTGGTGAACCATGTTGGTCATTTATTGCTCATAATGCAGATGAAGTTGAAAGATTTTTCAAAGAAACCATCGAAAATAGAGATGAGGGAATTGTAGTAAAAGACCTCAGCTCCAAATGGGAACCTAGTGACCGCAGTGGAAAATGGCTAAAACTGAAGCCTGATTATGTTCAAGCTGGCTCTGATCTGGATGTACTTATCATAGGTGGCTACTATGGTTCCGGACGACGTGGAGGAGAGGTTGCTCAATTTTTGGTGGGTCTTGCAGAGCGTCCATCCCCAAATACACATCCCAAACGATTTATCTCTTTTTGTAGAGTTGGTACTGGACTTTCTGATGACGAGCTTGAAGCAGTAGTAACCAAACTTAAACCTTACTTCAGAAAGTATCCAAAGAAGATGCAACCAAGTTTTTATCAAGTTACTCATCATTCCAAAGAAAGACCTGATGTGTGGGTTGATAGCCCTGAAAAATCAATTATTCTGTCTATAACCAGTGAAATCCGAACTATTGAATCTGAGGTATTTGCTGCACCTTACTCTCTGAGATTTCCTCGGATTGACAGGGTGAGATATGATAAGGCTTGGCATGAATGCCTTGATGTCCAATCATTTATAGAATTGGTGCAATCTAGCAATGGTACCACACAGAGGGATGCAGAATATGGGAGCAAGGACAGTAAATCAAAACGCATGAAATCCTCTGTAAAGGGAGAAAAGAAAAACGTGTCCATTATTCCTTCTCATTTAAGTCAAACTGATGTTTCCGGTGTTAAGGGAGGTTCCTTAATGTTTTCAAATATGATGTTCTACTTTGTTAATGTCCCTCCATCACATTCTCTCGAGTCGTTCCACAAATTAGTTGCTGAGAATGGCGGCACTTTCTCAATGAATTTGAATAACTCAGTCACCCATTGTATTGCAGCAAACAGCAAAGGGTTTAAATTTGAAGCAGCCAAACGTCGTGGTGATGTCATTCATTATACTTGGGTATTGGATTGCTATGCACAAAAGAAGCTCATCCCCTTGCAATCAAAGTACTTCCTCTTTGTTTCTGAACTGACCAAGAAGAAGTTACAAGAAGAAATTGACGAGTTCTCAGACTCTTACTATTTGGATCTTGATCTTCGAGACATAAAACAGCTCTTAAGCAATATTAATAGGTCAGAAGATGTCACTACTGTCGACCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTGTCTTTAATGGATGCTCCATTTATTTCCACACCACAATGCCATCATTGAAAGAAGATTGGCAAATTTTATTAGAACTTTCTTCGAAGAGATTCAAGCTTGAAGTTCTCATGGGTGGTGGAAAAGTCACCTCTAATCTTAAATCTGCAACTCATGTGGTGGCCTTGTTTGTACCAAGTTTTCGTACCAACTATGATGAAGAAATACATAGTAGTTTTACTTCAGTTGAGAGAAAGCTTCTCTGTAGCAAGAAGTTGCACATAGTTAATTCCAAGTGGTTAGAAGATTGTTTGAATAGTTGCCAAAGATTATCAGAAGACACTTATAGCTTGAAGCCTTATGGAATAGAAGAATCAACTGCTGAGGATTGTGAACATGACTTGGCGGAAGATGCTCATCTGGTTGAAGATAATGTAGAAGACCAAAATCAATCTTTTTCCAAAAAGGGAAGTAAGAAGAGTAGTGCCAAAGCTGCTTCTGAAGACAGTTTGGCTTTAGCATCACAAGAGCAGCGTGGCCCAAGGAAACGAGGAAGACCTGCGGGCACAGATGAAAGTGATTCTCTTGATAAAAGACCATATGAGCAAGAGGCTGACATTACACAAGGAAATATTGATTTTCACAATGAACATTTGGGACCACATGAGACTGAGAAAACTCATAATGTCCAAGGTACTGAAGTAGTAGAAAGTTCTGAACGAAACATGGGAATCGAGCTAGAGGATTTCAAGGACAACCAACATGAACATATGTTTGTTCCCGAAATTGAAATGAATGTGCGCAATGACCATAGTAGTCAGGGGACTGAGAAACTTGAAATTATGACTGATCCTGTGCAGGCAATGTTACTTGACATGATTCCTAGCCTTGCCATGAACAAAGTTGAGCAACCTACGAATCGTCATGTTGAGGAAGAGAAACCATCAGAAATCTCAAAACCACCAGAAATCTCCAACGAAGAGGCTCCGACTACAAAGAAAAAGAAAGTTAGCCTCAAGGCCATCGCTGGTGATCTGCTCAATGATTGGTAG 3420 0.4056 MTERIKFSVLCSLFTWTQRTKSPAKKRAKFRKFLDSFCTDRNYFPAIRLILPNLDRERGSYGLKESVLATSLIDALGLSKDSHDAVRLINWRKGGSKTGANAGNFALVAAEVLQLRQGTASGGLTIKELNDLLDQLASSENRGEKTLVLSTLIQKTNAQEMKWIIMIILKDLKLGFSEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEIGKAVRPQLAKRVANAAEAWKKLHGKEVVAECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHGMSEVIIQNILVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLESNRQLCYVAFDILYFGDTSVIHQTLKERHEILRKVVKPLKGRLEILLPNGGINSHWSSGEPCWSFIAHNADEVERFFKETIENRDEGIVVKDLSSKWEPSDRSGKWLKLKPDYVQAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSPNTHPKRFISFCRVGTGLSDDELEAVVTKLKPYFRKYPKKMQPSFYQVTHHSKERPDVWVDSPEKSIILSITSEIRTIESEVFAAPYSLRFPRIDRVRYDKAWHECLDVQSFIELVQSSNGTTQRDAEYGSKDSKSKRMKSSVKGEKKNVSIIPSHLSQTDVSGVKGGSLMFSNMMFYFVNVPPSHSLESFHKLVAENGGTFSMNLNNSVTHCIAANSKGFKFEAAKRRGDVIHYTWVLDCYAQKKLIPLQSKYFLFVSELTKKKLQEEIDEFSDSYYLDLDLRDIKQLLSNINRSEDVTTVDHYRKKYCPKDKWSVFNGCSIYFHTTMPSLKEDWQILLELSSKRFKLEVLMGGGKVTSNLKSATHVVALFVPSFRTNYDEEIHSSFTSVERKLLCSKKLHIVNSKWLEDCLNSCQRLSEDTYSLKPYGIEESTAEDCEHDLAEDAHLVEDNVEDQNQSFSKKGSKKSSAKAASEDSLALASQEQRGPRKRGRPAGTDESDSLDKRPYEQEADITQGNIDFHNEHLGPHETEKTHNVQGTEVVESSERNMGIELEDFKDNQHEHMFVPEIEMNVRNDHSSQGTEKLEIMTDPVQAMLLDMIPSLAMNKVEQPTNRHVEEEKPSEISKPPEISNEEAPTTKKKKVSLKAIAGDLLNDW 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02135 1139 FunFam DNA ligase 220 443 - -
Trre4g02135 1139 CDD Adenylation_DNA_ligase_IV 214 446 IPR044125 GO:0005524
Trre4g02135 1139 CDD BRCT_DNA_ligase_IV_rpt1 652 738 - -
Trre4g02135 1139 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 443 - -
Trre4g02135 1139 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre4g02135 1139 MobiDBLite consensus disorder prediction 1002 1026 - -
Trre4g02135 1139 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 3 208 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre4g02135 1139 PANTHER DNA LIGASE 4 3 1131 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Trre4g02135 1139 MobiDBLite consensus disorder prediction 1094 1124 - -
Trre4g02135 1139 NCBIfam ATP-dependent DNA ligase 61 597 IPR000977 GO:0003910|GO:0005524|GO:0071897
Trre4g02135 1139 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Trre4g02135 1139 MobiDBLite consensus disorder prediction 1005 1019 - -
Trre4g02135 1139 Pfam BRCT domain, a BRCA1 C-terminus domain 651 733 IPR001357 -
Trre4g02135 1139 MobiDBLite consensus disorder prediction 968 989 - -
Trre4g02135 1139 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
Trre4g02135 1139 FunFam DNA ligase 1 218 - -
Trre4g02135 1139 Pfam DNA ligase N terminus 6 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre4g02135 1139 Pfam ATP dependent DNA ligase domain 226 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre4g02135 1139 FunFam DNA ligase 663 777 - -
Trre4g02135 1139 ProSiteProfiles ATP-dependent DNA ligase family profile. 329 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre4g02135 1139 Pfam ATP dependent DNA ligase C terminal region 465 582 IPR012309 GO:0003910|GO:0006281|GO:0006310
Trre4g02135 1139 Gene3D - 444 603 IPR012340 -
Trre4g02135 1139 ProSiteProfiles BRCT domain profile. 794 907 IPR001357 -
Trre4g02135 1139 SUPERFAMILY BRCT domain 652 737 IPR036420 -
Trre4g02135 1139 ProSiteProfiles BRCT domain profile. 648 736 IPR001357 -
Trre4g02135 1139 MobiDBLite consensus disorder prediction 609 624 - -
Trre4g02135 1139 SUPERFAMILY Nucleic acid-binding proteins 449 598 IPR012340 -
Trre4g02135 1139 CDD OBF_DNA_ligase_IV 448 590 - -
Trre4g02135 1139 FunFam DNA ligase 444 603 - -
Trre4g02135 1139 Gene3D DNA ligase/mRNA capping enzyme 220 443 - -
Trre4g02135 1139 MobiDBLite consensus disorder prediction 944 963 - -
Trre4g02135 1139 MobiDBLite consensus disorder prediction 936 989 - -
Trre4g02135 1139 SUPERFAMILY BRCT domain 789 909 IPR036420 -
Trre4g02135 1139 SMART BRCT_7 650 726 IPR001357 -
Trre4g02135 1139 SMART BRCT_7 796 897 IPR001357 -
Trre4g02135 1139 MobiDBLite consensus disorder prediction 604 624 - -
Trre4g02135 1139 MobiDBLite consensus disorder prediction 1093 1124 - -
Trre4g02135 1139 Gene3D BRCT domain 794 907 IPR036420 -
Trre4g02135 1139 Gene3D BRCT domain 663 776 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02135 Trre-Chr4 18968959 18991396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02135 124 599 Core DNA Replication Machinery Family AT1G08130 25.862 5.00e-33 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02135 K10777 - gmx:100816002 1775.37