Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02129 ATGCGGGATACTGAGAAGTTAAATAGCAAAGGATCTGCAAAATCCAATAACTCAAAGGAACATATTGAGTCGAAGTTAGATTCGCCGCGACTCAAAAAAAGTAGCACAAAAGATGAAGGGAAGAAACAAAAACTGAAATCAAAATCTCATAAACTCAGAGGTTGCACAAATGCGCCAGAGAGAATAGCTACTAATGATTCTTCTAACAAGGCACCAAACAAGAAGAACGATTCTTCGAATAAAAGATTGATTATTAGAAAAAATCTTCATAAAACTGATAGGAATTCTTCACCGGTTCAGCCGTCAACGAAGATACAAGGAGAAAAAATTTCTCTTAATAATCGTAGGAAACGTGAGAAAGATGTTGATCAGGAGGAAAATATTCAAAAACGGAAGAGAAGGAGAAAGAAGAAAAAACAAAAACAAAATGTAGATCTTGATGATACTTCACGGCTCCAGAGACGAACAAGGAATCTCTTAATCAGAATGAAGCTAGAGCAGAACCTTATCGATGCTTACTCCGGAGAAGGTTGGAAAGGTCAAAGTCGAGAGAAGATTAGGCCAGAAATGGAGCTACAAAGAGCAAAGAAGCAGATTTTGAAATGCAAGCTTAGTATCCGCGATGCCATTCGCCAGCTGGATTCTCTTAGTTCAGTTGGTAGCATTGAAGGTTCTGTCATTGCTACCGATGGATCGGTTTCTCATGAACATATATTCTGCGCAAATTGCAAGATGAACGAAGCTTTTCCAGATAATGATATTATACTCTGCGATGGCACATGTAATCGTGCGTTTCACCAGAGATGTCTTGATCCTCCTTTGGATACTGAAAACATTCCGCCTGGAGACCAAGGTTGGTTTTGCAAATTTTGTGAATGTAAGATAGAAATACTGGAGGCAACAAATGCGCATCTCGGGACTCATTTCTCCTTAGACAGTACTTGGCAGGATGTATTCAAGGAAGAGGCTGCTATTCCTGACGGCGATGATGCATTACTCAATCAAGAAGAAGAATGGCCGTCAGATGATCCTGAAGACGATGACTATAATCCAGACAGGAAAGAAGACAGCAGCGGCGGCATCGACACAGAAGGAAATGATGAAAACGCATCTGATAATGATTCAAGTAGTTCTGGCAGTATGTGGTCTTTAAATGGCGAATGTTCTCTGTTAGATGAAGGCATCAACCTTGAATATTATTCTGCTAACGGCCATGTAGATTCTGATGAATCCGGGGAAATAGCTTGCGGTCGTAGGCAGCGAAGAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGATGCTCTTCCATATGAACAAGTGAGTGAAGACGAAGATTGGGGTCCTGGAAAAAGACGGCGAAGAGAAAAGGAATCTGATGCAGTTAATACTCTTATGACTCTGCATGAAAGTGAAAATAAACATCCGAATAATGAGAAGAAAGATAGAATAAGAGGGGATTCTTCAGGCATAAAAAGACCTTGTTTCAGGCTTCCACATGATGCAGTCGAGAAGCTTCGCCAGGTTTTTGCTGAGAATGAGCTTCCTCCAAAATCTGTGAAGGATGCCCTTTCGAAAGAATTGGGACTTGATGCGGCAAAGGTTAACAAATGGTTCAAAAATGCACGTTACATGGCACTTAAAACGAGAAAGCATCGAGAAGGAGGGCAACAGCTTCAGAGTATAACTTCTAAGACCTCAAAGGATTCTACGTCACAACATGTGCAGAAAGATGAGATTTTGAAACCGGAGGTGTCAAAAGACACCGTGGTTCATTCCCAGAAGCAGATTGAAAATGTCACTGACAAAGAGAAAACAAAGACATCCAGCAGTCCCTTGAAGAAAAAGCGAAAGCGACCCGAAATGCCTCCACCGTTGAGTGAAAATGGCAACAAGGAATCTACGGAGGTCAACGATGATTTCAACGAAGATGTTAGCTTGATGAAACTGTTGAAAGAAAGGAAAAAGAAAGTAAGTTTTGCATTCGAAGGAGACTATGAGGCAGCCGAGATGGAATTCGAAAGACTCAGCAAAGTAAAGATGAAATTAGATAGATTGAAACAAAAATTAAGTCAAGTTCAAAATTACAGATCAAAGGGTTCAGATGAAGTTTATTTGAATGAGCCATCTATTGTTTATGTGCCTGTAGCTGAGTTAAGGGAAAAGGTTAAATAG 2184 0.4029 MRDTEKLNSKGSAKSNNSKEHIESKLDSPRLKKSSTKDEGKKQKLKSKSHKLRGCTNAPERIATNDSSNKAPNKKNDSSNKRLIIRKNLHKTDRNSSPVQPSTKIQGEKISLNNRRKREKDVDQEENIQKRKRRRKKKKQKQNVDLDDTSRLQRRTRNLLIRMKLEQNLIDAYSGEGWKGQSREKIRPEMELQRAKKQILKCKLSIRDAIRQLDSLSSVGSIEGSVIATDGSVSHEHIFCANCKMNEAFPDNDIILCDGTCNRAFHQRCLDPPLDTENIPPGDQGWFCKFCECKIEILEATNAHLGTHFSLDSTWQDVFKEEAAIPDGDDALLNQEEEWPSDDPEDDDYNPDRKEDSSGGIDTEGNDENASDNDSSSSGSMWSLNGECSLLDEGINLEYYSANGHVDSDESGEIACGRRQRRAVDYKKLYDEMFGKDALPYEQVSEDEDWGPGKRRRREKESDAVNTLMTLHESENKHPNNEKKDRIRGDSSGIKRPCFRLPHDAVEKLRQVFAENELPPKSVKDALSKELGLDAAKVNKWFKNARYMALKTRKHREGGQQLQSITSKTSKDSTSQHVQKDEILKPEVSKDTVVHSQKQIENVTDKEKTKTSSSPLKKKRKRPEMPPPLSENGNKESTEVNDDFNEDVSLMKLLKERKKKVSFAFEGDYEAAEMEFERLSKVKMKLDRLKQKLSQVQNYRSKGSDEVYLNEPSIVYVPVAELREKVK 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02129 727 CDD homeodomain 495 556 IPR001356 GO:0003677
Trre4g02129 727 FunFam pathogenesis-related homeodomain protein-like 231 291 - -
Trre4g02129 727 MobiDBLite consensus disorder prediction 470 498 - -
Trre4g02129 727 ProSitePatterns Zinc finger PHD-type signature. 240 291 IPR019786 -
Trre4g02129 727 MobiDBLite consensus disorder prediction 574 626 - -
Trre4g02129 727 SMART HOX_1 494 556 IPR001356 GO:0003677
Trre4g02129 727 MobiDBLite consensus disorder prediction 475 493 - -
Trre4g02129 727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 288 IPR013083 -
Trre4g02129 727 MobiDBLite consensus disorder prediction 334 381 - -
Trre4g02129 727 MobiDBLite consensus disorder prediction 363 381 - -
Trre4g02129 727 MobiDBLite consensus disorder prediction 551 642 - -
Trre4g02129 727 MobiDBLite consensus disorder prediction 16 45 - -
Trre4g02129 727 Pfam Homeodomain 503 547 IPR001356 GO:0003677
Trre4g02129 727 CDD PHD_PRHA_like 239 291 IPR045876 -
Trre4g02129 727 ProSiteProfiles Zinc finger PHD-type profile. 237 294 IPR019787 -
Trre4g02129 727 Pfam PHD-finger 239 294 IPR019787 -
Trre4g02129 727 SUPERFAMILY FYVE/PHD zinc finger 231 296 IPR011011 -
Trre4g02129 727 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 9 726 - -
Trre4g02129 727 SMART PHD_3 239 292 IPR001965 -
Trre4g02129 727 Coils Coil 122 142 - -
Trre4g02129 727 MobiDBLite consensus disorder prediction 75 93 - -
Trre4g02129 727 FunFam pathogenesis-related homeodomain protein 494 558 - -
Trre4g02129 727 MobiDBLite consensus disorder prediction 1 150 - -
Trre4g02129 727 ProSiteProfiles 'Homeobox' domain profile. 492 552 IPR001356 GO:0003677
Trre4g02129 727 MobiDBLite consensus disorder prediction 559 573 - -
Trre4g02129 727 Gene3D - 494 560 - -
Trre4g02129 727 SUPERFAMILY Homeodomain-like 489 553 IPR009057 -
Trre4g02129 727 Coils Coil 679 699 - -
Trre4g02129 727 MobiDBLite consensus disorder prediction 94 109 - -
Trre4g02129 727 MobiDBLite consensus disorder prediction 60 74 - -
Trre4g02129 727 MobiDBLite consensus disorder prediction 110 130 - -
Trre4g02129 727 MobiDBLite consensus disorder prediction 334 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02129 Trre-Chr4 18888129 18892394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02129 139 554 Homeobox Transcription Factor Family AT4G29940 59.535 3.98e-164 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Trre4g02129 Homeodomain 1.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02129 - - gmx:100816912 928.702