Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02108 ATGAAGGATAGAGACTCTGATAGTGGTGGTGGTGGTTATCATCCACAACCACCGCCGCATCAAGAACTTTTGACTCAGTATAAGGCTGCTCTGGCTGAGCTTACTTTCAACTCGAAACTTATAATTACCAATTTGGCTATAATTGTTGGAGAGAATCTTTCTGCTGCAAAATCAATTGCTGGAGTTGTTTGTGCTAACATTCTAGAGGTTGATCCTCCTGTCCATTCAAGTATGAGGCATCTTTTTGGGACTTGGAGAGGAGTCTTTCCTCCTCAGGCCCGTCAGATAATTGAGAAGGAACTCGGCTTCACTCCAGCAGTCAATGGTTCAGCTTCTGCATCTGCCGCCCTTAGAAGTGATTCTCAGTCTCAAAGCCCAGCTCATGGCATTCATGTGAATCTCAAATATTTAGAAAGGGCCTTCAGCAGTCCAACATGGCAGGTGAAATGA 450 0.4467 MKDRDSDSGGGGYHPQPPPHQELLTQYKAALAELTFNSKLIITNLAIIVGENLSAAKSIAGVVCANILEVDPPVHSSMRHLFGTWRGVFPPQARQIIEKELGFTPAVNGSASASAALRSDSQSQSPAHGIHVNLKYLERAFSSPTWQVK 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02108 149 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 69 138 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Trre4g02108 149 Gene3D - 16 73 IPR008942 -
Trre4g02108 149 SUPERFAMILY ENTH/VHS domain 19 105 IPR008942 -
Trre4g02108 149 MobiDBLite consensus disorder prediction 1 20 - -
Trre4g02108 149 SMART 558neu5 22 102 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02108 Trre-Chr4 18569098 18570512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02108 7 139 C2H2 Transcription Factor Family AT4G04885 34.857 2.08e-24 96.3