Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02086 ATGTTTTCTTGGTTAACAAGATTAGTTTCATCATGCAGCTTGAGACCAAATGCACGTATGAACAAAGATATTGAAAATGATTTTGATGTATCTGAAGATGCTCTTGTTTGGTGTAAAGACCTTGAGAAACACTCATGTGGTGAATTCTCTTTTGCTATTGTTCAAGCTAATGAAGTTATGGAAGATCATAGTCAAGTTGAAACTGGTTCTGATTCTGTCTTTGTTGGTGTTTATGATGGACATGGTGGTCCTGATGCTTCTCTGTTTGTTAATAATCATCTCTTTAATCATCTCATCCGGATTGCAAAAGAAAATGATTCTATCTCCGAAGATATTATAAGGAATGCTGTTACTGCTACGGAGGATGGATTTATGACTCTTGTTCGAAGGAGCTTCGAAATAAAGCCACTGATAGCAGCAATGGGTTCTTGTTGTCTTGTTGGTGTTATTTGGAAAGGGACATTATATATTGCTAATCTTGGAGACTCTCGAGCTGTCATCGGTTCAATTGGTCGATCTAACAAGATCGTTGCTAAACAGTTGACCAAAGAGCACAATGCCTGCAAAGCTGATATCAGAACAGAACTTAGGTCTTTGCATCCAGATGATTCGCAAATTGTTGTTATGAAACATGGAACATGGCGCGTTAAAGGCATTATCCAGGTATCAAGATCTATAGGAGATGCATTTTTGAAACAGCCGGAGTTCTCCTTTGATCCATCATTCCCGAAGTTTCACTTGTCTGATCCTATCCGCCGACCGGTGCTATCAGCAGAACCATCTATGTGTTCAATCGTTTTACAACCTAATGATCAATTCGTTATATTTGCATCTGACGGCCTTTGGGAACACATGACAAATCAAGAAGCTGCTGAGATTGTTCATAGCAACCCTAGAACTGGAATTGCAAGAAGACTTCTTCAGACTGCTTTGAATGAGGCGGCAAGGAAAAGCGAAGTGAGTTATAATGATCTGCTGAAGGTTGAAAAGGGGACTAGGCGATTTTTCCACGATGATATCACAATCGTTGTTATCTTCATCGACCACGAGTTGCAAAATCAGAATGTTAATGTTCCTGAGTTATCCATAAAAGGTTTTATCGACACAGTTGGACCATCAAAATTTAGTAGTTTCCATGAAATGCAATGA 1149 0.3908 MFSWLTRLVSSCSLRPNARMNKDIENDFDVSEDALVWCKDLEKHSCGEFSFAIVQANEVMEDHSQVETGSDSVFVGVYDGHGGPDASLFVNNHLFNHLIRIAKENDSISEDIIRNAVTATEDGFMTLVRRSFEIKPLIAAMGSCCLVGVIWKGTLYIANLGDSRAVIGSIGRSNKIVAKQLTKEHNACKADIRTELRSLHPDDSQIVVMKHGTWRVKGIIQVSRSIGDAFLKQPEFSFDPSFPKFHLSDPIRRPVLSAEPSMCSIVLQPNDQFVIFASDGLWEHMTNQEAAEIVHSNPRTGIARRLLQTALNEAARKSEVSYNDLLKVEKGTRRFFHDDITIVVIFIDHELQNQNVNVPELSIKGFIDTVGPSKFSSFHEMQ 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02086 382 SUPERFAMILY PP2C-like 54 348 IPR036457 -
Trre4g02086 382 ProSitePatterns PPM-type phosphatase domain signature. 74 82 IPR000222 GO:0043169
Trre4g02086 382 SMART PP2C_4 42 345 IPR001932 -
Trre4g02086 382 FunFam Probable protein phosphatase 2C 42 39 355 - -
Trre4g02086 382 Gene3D - 21 358 IPR036457 -
Trre4g02086 382 PANTHER PROTEIN PHOSPHATASE 37 345 IPR015655 GO:0004722|GO:0006470
Trre4g02086 382 ProSiteProfiles PPM-type phosphatase domain profile. 48 347 IPR001932 -
Trre4g02086 382 Pfam Protein phosphatase 2C 63 316 IPR001932 -
Trre4g02086 382 CDD PP2Cc 55 347 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02086 Trre-Chr4 18298996 18301523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02086 1 378 PP2C-type Phosphatase Gene Family AT5G06750 64.706 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02086 K01102 - gmx:100778238 605.905