Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02082 ATGGACTTCTCAAGAAATATGGCCGATGCTCAACAAGAAGAGGACCGTAACAATCCAAAAAGAGCAGGAAAACAACATCATTCTCCCATTCAAACAAGTAGACTGGAAGAAATATTTGTGACATGCAAACATCCGACTAAGATCCAAAGATGTGATATCGCAAAAGAGATCGGGCTTCAACCAAAACAAGTGCAGTTTTGGTTTCAAAACAAAAGGACTCAAAAAAAGTCTCAAAATGAGAAAGCGGCTTGCATTGAACTTCGTGCTGAAAATGAAAAGCTACACAATGAGAATATTCGGATGAAGGAACAATTGAAGAATACTCTTTGCATAACATGTGGTCGTCCGTTTTGTATGAATCATGGGAACTCGGTGGAACAACTTCGATTTGAAAATGCTCGTCTCAAAGAAGAGGTGAGTTAA 423 0.3877 MDFSRNMADAQQEEDRNNPKRAGKQHHSPIQTSRLEEIFVTCKHPTKIQRCDIAKEIGLQPKQVQFWFQNKRTQKKSQNEKAACIELRAENEKLHNENIRMKEQLKNTLCITCGRPFCMNHGNSVEQLRFENARLKEEVS 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02082 140 Gene3D - 4 84 - -
Trre4g02082 140 ProSiteProfiles 'Homeobox' domain profile. 18 78 IPR001356 GO:0003677
Trre4g02082 140 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 19 139 IPR042160 -
Trre4g02082 140 SUPERFAMILY Homeodomain-like 17 81 IPR009057 -
Trre4g02082 140 Coils Coil 77 107 - -
Trre4g02082 140 ProSitePatterns 'Homeobox' domain signature. 53 76 IPR017970 GO:0000981|GO:0006355
Trre4g02082 140 Pfam Homeodomain 24 76 IPR001356 GO:0003677
Trre4g02082 140 SMART HOX_1 20 82 IPR001356 GO:0003677
Trre4g02082 140 MobiDBLite consensus disorder prediction 1 32 - -
Trre4g02082 140 MobiDBLite consensus disorder prediction 7 22 - -
Trre4g02082 140 CDD homeodomain 24 79 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02082 Trre-Chr4 18106205 18108488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02082 13 139 Homeobox Transcription Factor Family AT1G05230 44.186 7.89e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre4g02082 Homeodomain 3.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02082 K09338 - gmx:100794552 125.176