Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02059 ATGTGCAACGGTTCAAAGAGAAAGCCTTCTCAAACTGGTTTGATTAGTGAACATGAATATGGAAGAGAAGAAGAACTTCATCGTAAGATCTCTGCATTGCTCGAGTTTTCCGCCAAAGATGATGTAATAGCTTTCAAAGATGCTGTTGAAAAATACGGTTGTGATGTCGATGAGGTAGGGTTATGGTATGGAAGGAAGGTTGGCTCAAAGGAAATGAGTTATGAAGAAAGGACTCCTCTTATGATTGCTGCCTTATTTGGAAGCAAGGGTGTGTTGTGTTATATTCTTGAAACCGGTCTTGTTGATGTTAACCGAGCGTGTGGTTCGGATGGTGCTACTGCTCTTCATTGTGCTGTTTTTGGTTGTTCTGCTGCTTCTGTTGAGGTTGTCAAGCTTTTGGTTGATGCATCTGCAGATGTTAGTTCTCTTGATGCAAACGGTAACCGATCAAGTGATTTGATTGATTCGGTTTCTAATAGTGTCTTTGGTTCAAGGAAAAAGATACTAGCCATACTAGAAGGTAAAGATGGTGTTGATTATGACGCCGGTTGCCTTATGGAAGGAGGTTTCCAAATGGTGAATCTGCAACAAGATTCAGGTTCACCTCGAATCGAGAAGAAAGATTATCGGGTTGATACATCCCTACCGGACATAAAGAGTGTGATATATAGTACAGATGAATTTAGGATGTATACTTTTAAAGTCAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACCGAGTGCCCCTTTGCTCATCCTGGGGAAAATGCAAAGCGCCGTGATCCGAGGAAATATCATTACAGCTGTGTCCCTTGTCCCGAATTTCGGAATGGATCATCATGCATTAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAGACCTGGCTTCATCCTGCTCAATATAGAACGAGGCTTTGCAAAGATGATACTAAATGCACAAGAAGGGTTTGTTTCTTTGCTCACAATTCCGAAGAGCTTCGTCCGGTGTACGCTTTTACTGGTTCAGCTTTGCCTTCACCTACTTCATATTCAAATTCACCTAGTGCTTCTTCAATGGATTCATTCACTGTGAACTCTCCATCTGAGGCGATGCCACCTCTGACTCCATCTGCAGTGTCTTCTCCTTCATGCGGCGGAACCATGTGGCCGAATCAGTCTCATGTTGCAACCCCGACACTTCATATGCCGAGAATCAGAATGAATACTGCACATAATGCTAGAGATAATATTGAATTGGTCGAACTTGAAAACCTCCTTATTCAGAGGAAGCTAATGATTGAAGAGATGACAAATTGGTTTTCAGGAGTGAATCTTACTAACCTTGAAGACATTTTTGGGTCTTCGAGACAATCTCCATCATCAATGCTGGTGCACCAGAATGTAAACCAGCATCTGCGAGTCTATCCTTCTGACATTACCAATTCAAATGTGATTGGATCACCACAATTCAGGGCTGATCGATCTATGAGTTCAAGATATGATGCCTTTACGAAGTGGAGTCATAGCTTTATTGAGCGCAGCAGCACGACAAGCTTTAATTCTGAGCTTCCTTCTGCTATGTCAGTCGCTGCGGCACCTTCAAACTTCTCTGGTTGGGGATCTCCAGATGGAAAATTAGACTGGTCCATTCGCGGTGATGAACTCAACAAAATGAGGAAATCATATTCTTTCGGCTTTCGAAACACAAATAGCTTTTCAGCAATGGCTGCACCAAATGTTGATAATCCAGATGTATTGTCGAGCCAAGAAAGATGGATTAATTCACTGGTGAAGAATGCCAGCTTCTCCAACATTGGAATCTGA 1812 0.4227 MCNGSKRKPSQTGLISEHEYGREEELHRKISALLEFSAKDDVIAFKDAVEKYGCDVDEVGLWYGRKVGSKEMSYEERTPLMIAALFGSKGVLCYILETGLVDVNRACGSDGATALHCAVFGCSAASVEVVKLLVDASADVSSLDANGNRSSDLIDSVSNSVFGSRKKILAILEGKDGVDYDAGCLMEGGFQMVNLQQDSGSPRIEKKDYRVDTSLPDIKSVIYSTDEFRMYTFKVKPCSRAYSHDWTECPFAHPGENAKRRDPRKYHYSCVPCPEFRNGSSCIKGDACEYAHGIFETWLHPAQYRTRLCKDDTKCTRRVCFFAHNSEELRPVYAFTGSALPSPTSYSNSPSASSMDSFTVNSPSEAMPPLTPSAVSSPSCGGTMWPNQSHVATPTLHMPRIRMNTAHNARDNIELVELENLLIQRKLMIEEMTNWFSGVNLTNLEDIFGSSRQSPSSMLVHQNVNQHLRVYPSDITNSNVIGSPQFRADRSMSSRYDAFTKWSHSFIERSSTTSFNSELPSAMSVAAAPSNFSGWGSPDGKLDWSIRGDELNKMRKSYSFGFRNTNSFSAMAAPNVDNPDVLSSQERWINSLVKNASFSNIGI 603
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02059 603 ProSiteProfiles Zinc finger C3H1-type profile. 272 295 IPR000571 GO:0046872
Trre4g02059 603 FunFam Zinc finger CCCH domain-containing protein 66 225 294 - -
Trre4g02059 603 SMART ANK_2a 75 105 IPR002110 GO:0005515
Trre4g02059 603 SMART ANK_2a 110 142 IPR002110 GO:0005515
Trre4g02059 603 Gene3D - 269 331 - -
Trre4g02059 603 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Trre4g02059 603 SUPERFAMILY Ankyrin repeat 47 148 IPR036770 -
Trre4g02059 603 PANTHER UNKEMPT FAMILY MEMBER 35 595 IPR045234 -
Trre4g02059 603 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Trre4g02059 603 SMART c3hfinal6 303 326 IPR000571 GO:0046872
Trre4g02059 603 SMART c3hfinal6 267 294 IPR000571 GO:0046872
Trre4g02059 603 Pfam Ankyrin repeats (3 copies) 68 141 IPR002110 GO:0005515
Trre4g02059 603 Gene3D - 27 169 IPR036770 -
Trre4g02059 603 MobiDBLite consensus disorder prediction 345 379 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre4g02059 Trre-Chr4 17690318 17692129 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02059 25 561 C2H2 Transcription Factor Family AT5G12850 40.000 2.68e-130 396
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre4g02059 Ank_2 5.7e-07 CL0465
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02059 - - mtr:11423139 761.525