Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02040 ATGGAAGGCCAAAAAAATAAACGCAAGCGCGTTTATTCGGTTGAACCAAACAAAGTAGTGCAAGCAAAATTTACTAGAAACTATATGAACTATTTAGCACCAGCTTTGATGAAGATCAAGGAAGAAAGAAGAAATTCTATTGAAGCCAAGAATGTTGAAAATGTTGTCAAGTATGAAGTGGACATGGCAATGGTTTTTTCATCTCAAGGTTTTGCTTGGAGTAATGCTCTAAAATTGAAGCTTCAAAAAGATGGTGGTGGTGAAGGTTCATCAAGAATTAATTATCAACAAAATGAAATGGGCCCACTTGATTTTTCTAAAAAAAATTGTTCAAAATCTGAGGTTAGTAAGATTTTGGTGGAAAAAAAATTGGTTGAAGAAAATGATTATGATGAAGATGAGATTGTGGATGACCAATTGAGGTGTCTTAGAAAATTGATTCCAGGAGGAGAAGAGATTATGTGTGATGAGAAAATGGTGAGTGAATTAGAGAGCTATGTAAGTTGTTTGCAAATGCAGGTGAATATTCTAAAATGTCTCACTGATTAG 549 0.3388 MEGQKNKRKRVYSVEPNKVVQAKFTRNYMNYLAPALMKIKEERRNSIEAKNVENVVKYEVDMAMVFSSQGFAWSNALKLKLQKDGGGEGSSRINYQQNEMGPLDFSKKNCSKSEVSKILVEKKLVEENDYDEDEIVDDQLRCLRKLIPGGEEIMCDEKMVSELESYVSCLQMQVNILKCLTD 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02040 182 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 23 182 IPR044660 GO:0006355
Trre4g02040 182 CDD bHLH_AtIBH1_like 125 181 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02040 Trre-Chr4 17329874 17330422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02040 6 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30180 32.402 1.34e-19 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02040 - - aprc:113852314 197.593