Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02039 ATGGCTGCTGGTGAAAAGGGTTCAATCTCACTAGATCAGATCAAGAATGAGACTGTTGATTTGGAACGTATTCCAATTGAGGAAGTGTTTGAGCAGTTGAAATGTACCAGAGAAGGTTTGTCCACTGCAGAAGGAGAAAACAGGATTCAAATTTTTGGTCCAAACAAGCTAGAAGAAAAAAAGGAGAGCAAATTTCTGAAGTTTCTTGGGTTTATGTGGAATCCATTATCATGGGTGATGGAAGCTGCAGCTATAATGGCAATTGCTCTTGCAAATGGCGAAGGGCAACCACCAGATTGGCAAGATTTTGTAGGAATTGTTTGCTTGTTGGTTATCAATTCCACAATTAGTTTCATTGAAGAAAACAATGCTGGTAATGCTGCTGCTGCTCTTATGGCCGGTCTTGCTCCTAAGACAAAGGTTCTTAGAGATGGAAAATGGAGTGAGCAAGAGGCTGCAGTTCTAGTCCCTGGAGACATCATTAGCATCAAACTCGGTGACATTATACCAGCCGATGCTCGTCTTCTAGAAGGCGATCCTTTAATGGTTGACCAAGCAGCATTAACAGGAGAATCACTTCCAGTAACTAGACATCCAGGACAAGAAGTTTTCTCGGGCTCAACTTGCAAACAAGGAGAAATCGAAGCCGTTGTTATAGCAACCGGTGTCCACACATTCTTCGGAAAAGCAGCACATTTAGTTGACAGTACAAACAATGTTGGACATTTCCAAATGGTTCTCAAAGCAATTGGAAACTTTTGTATCTGTTCCATTGCTGTTGGTATGTTGGCTGAGATTATCGTCATGTATCCGATCCAACACCGCAAATATCGCGATGGAATTGACAACCTTTTAGTCCTTTTGATCGGTGGAATTCCAATTGCTATGCCAACTGTTTTGTCTGTTACAATGGCTATTGGTTCTCACAAACTTTCTCAGCAAGGTGCTATCACAAAAAGAATGACTGCTATTGAAGAAATGGCTGGTATGGATGTTCTTTGCAGTGACAAAACTGGAACTCTTACTCTTAACAAATTGAGTGTCGATAGAAACTTGATTGAGGTGTTTATAAAGGGTGTGGATAAGGAACATGTGATCCTTCTTGCTGCTAGGGCTGCTAGGACTGAAAATCAGGATGCTATAGATTCTGCTATCGTTGGAATGCTTGCTGACCCTAAAGAGGCAAGAGCCGGGATAAGAGAGGTGCATTTCTTGCCATTCAATCCTGTCGATAAGAGAACTGCTTTGACTTATATTGATAGTGATGGAAATTGGCATAGAGCTAGCAAAGGTGCTCCTGAACAGATCATGAACTTGTGTAACCTTAGGGAAGATGCTAAGAAGAAGGTTCATGGTATTATTGAAAAGTTTGCAGAAAGAGGACTACGTTCACTCGGAGTTGCTAGACAGGAAGTTCCTGAGAAAACAAAGGAAAGTGCTGGTGCTCCATGGCAGTTTGTCGGTTTGTTGTCTGTGTTTGATCCTCCTCGTCATGACAGTGCTGAAACCATCCGTAGAGCTCTTCTTCTCGGTGTAAATGTTAAGATGATTACAGGTGATCAACTTGCCATAGCTAAAGAAACCGGTAGGAGACTTGGTATGGGAACCAATATGTATCCATCTTCTACCTTGCTTGGTCAAGACAAAGATGCAAATATTGCCGCAATTCCAGTTGAAGAGCTGATTGAGAAAGCAGATGGATTTGCTGGAGTTTTTCCAGAACATAAATATGAAATTGTGAAGAAATTACAAGAGAGGAAGCACATTTGTGGAATGACTGGAGATGGTGTGAATGATGCACCTGCATTGAAGAAAGCTGACATTGGAATTGCTGTCGCTGATGCCACCGATGCTGCACGAGGTGCTTCTGATATAGTCTTGACAGAACCTGGTTTGAGTGTTATCATCAGTGCAGTCTTGACAAGTAGAGCTATTTTCCAAAGAATGAAGAATTACACGATTTATGCAGTGTCTATCACTATCCGTATAGTGTTTGGCTTCATGTTTATTGCATTGATATGGAAGTTTGATTTCTCTCCATTCATGATTTTGATTATTGCCATTTTAAATGACGGAACAATCATGACAATATCAAAGGACAGGGTTAAGCCATCTCCAATGCCTGATAGCTGGAAACTGAAAGAAATATTTGCTACTGGCGTCATGCTTGGAGGTTACTTGGCATTGATGACTGTGATATTCTTCTGGATAGTGAAAGACACTAAGTTCTTCCCTGAAAGATTTGGTGTTAGACATATTCATGACAGTCCTGATGAATTGACAGCTGCTTTGTACCTACAAGTTAGTATAGTTAGTCAAGCTTTGATCTTTGTAACTCGTTCGCGTAGCTGGTCTTATATCGAACGACCCGGAATGTTGTTAATGGGTGCTTTCCTCATTGCTCAACTGATTGCTACATTAATAGCAGTATATGCCAACTGGGGCTTTGCAAGAATCCAAGGAATTGGTTGGGGTTGGGCAGGTGTCATTTGGCTCTATAGTATTGTCTTCTACATTCCTCTTGACATCATCAAGTTCGCTACTCGCTATGGCTTAAGCGGCAAAGCATGGCTAAACCTTCTAGAAAACAAGACTGCCTTCACTACCAAGAAAGATTATGGTAAAGAAGAGAGGGAAGCTCAATGGGCTCATGCTCAAAGGACACTTCATGGACTTCAACCACCAGAAAGTTCTGGAATCTTCAATGAGAAGAGCAGTTATAGAGAATTGTCTGAGATTGCTGAGCAGGCTAAGAGACGTGCCGAAGTTGCTAGGCTTCGCGAACTTCATACCCTTAAAGGACATGTTGAATCTGTTGTGAAGCTGAAAGGACTAGACATAGACACTATACAACAACATTACACTGTCTGA 2871 0.4155 MAAGEKGSISLDQIKNETVDLERIPIEEVFEQLKCTREGLSTAEGENRIQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGEGQPPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAVLVPGDIISIKLGDIIPADARLLEGDPLMVDQAALTGESLPVTRHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQMVLKAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDRNLIEVFIKGVDKEHVILLAARAARTENQDAIDSAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGNWHRASKGAPEQIMNLCNLREDAKKKVHGIIEKFAERGLRSLGVARQEVPEKTKESAGAPWQFVGLLSVFDPPRHDSAETIRRALLLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSTLLGQDKDANIAAIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMILIIAILNDGTIMTISKDRVKPSPMPDSWKLKEIFATGVMLGGYLALMTVIFFWIVKDTKFFPERFGVRHIHDSPDELTAALYLQVSIVSQALIFVTRSRSWSYIERPGMLLMGAFLIAQLIATLIAVYANWGFARIQGIGWGWAGVIWLYSIVFYIPLDIIKFATRYGLSGKAWLNLLENKTAFTTKKDYGKEEREAQWAHAQRTLHGLQPPESSGIFNEKSSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02039 956 Pfam E1-E2 ATPase 136 313 - -
Trre4g02039 956 FunFam Plasma membrane ATPase 346 493 - -
Trre4g02039 956 Gene3D - 346 493 IPR023299 GO:0000166
Trre4g02039 956 Gene3D - 99 820 - -
Trre4g02039 956 Coils Coil 907 927 - -
Trre4g02039 956 FunFam ATPase 4 plasma membrane-type 578 820 - -
Trre4g02039 956 PRINTS P-type cation-transporting ATPase superfamily signature 510 520 - -
Trre4g02039 956 PRINTS P-type cation-transporting ATPase superfamily signature 616 628 - -
Trre4g02039 956 PRINTS P-type cation-transporting ATPase superfamily signature 488 499 - -
Trre4g02039 956 PRINTS P-type cation-transporting ATPase superfamily signature 593 612 - -
Trre4g02039 956 PRINTS P-type cation-transporting ATPase superfamily signature 334 348 - -
Trre4g02039 956 PRINTS P-type cation-transporting ATPase superfamily signature 184 198 - -
Trre4g02039 956 ProSitePatterns E1-E2 ATPases phosphorylation site. 336 342 IPR018303 -
Trre4g02039 956 SFLD Haloacid Dehalogenase 316 644 - -
Trre4g02039 956 NCBIfam HAD-IC family P-type ATPase 568 683 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre4g02039 956 NCBIfam HAD-IC family P-type ATPase 106 351 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre4g02039 956 FunFam Plasma membrane ATPase 486 641 - -
Trre4g02039 956 Gene3D - 905 956 - -
Trre4g02039 956 SUPERFAMILY HAD-like 330 640 IPR036412 -
Trre4g02039 956 Gene3D - 331 630 IPR023214 -
Trre4g02039 956 SFLD p-type atpase 316 644 IPR044492 -
Trre4g02039 956 PANTHER CALCIUM-TRANSPORTING ATPASE 22 888 - -
Trre4g02039 956 SMART Cation_ATPase_N_a_2 20 92 IPR004014 -
Trre4g02039 956 CDD P-type_ATPase_H 39 846 IPR006534 GO:0008553|GO:0016020|GO:0120029
Trre4g02039 956 PRINTS H+-transporting ATPase (proton pump) signature 450 468 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre4g02039 956 PRINTS H+-transporting ATPase (proton pump) signature 593 609 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre4g02039 956 PRINTS H+-transporting ATPase (proton pump) signature 624 649 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre4g02039 956 PRINTS H+-transporting ATPase (proton pump) signature 765 786 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre4g02039 956 PRINTS H+-transporting ATPase (proton pump) signature 565 581 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre4g02039 956 SUPERFAMILY Calcium ATPase, transduction domain A 137 234 IPR008250 -
Trre4g02039 956 Gene3D - 137 221 - -
Trre4g02039 956 FunFam Plasma membrane ATPase 137 221 - -
Trre4g02039 956 Pfam Cation transporter/ATPase, N-terminus 24 86 IPR004014 -
Trre4g02039 956 NCBIfam plasma-membrane proton-efflux P-type ATPase 39 811 IPR006534 GO:0008553|GO:0016020|GO:0120029
Trre4g02039 956 Pfam haloacid dehalogenase-like hydrolase 330 607 - -
Trre4g02039 956 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 850 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02039 Trre-Chr4 17290135 17299359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02039 10 956 Primary Pumps ATPases AT4G30190 84.286 0.0 1629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02039 K01535 - gmx:100804422 1734.92