Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02030 ATGAGTTTTCACTATCAATTTCCTGATTCTCCTCCTACCTTTTATTCTACATCAGACAATTTTCAATCACAAGCTCAAACCACTTTTGACAGATTTGGTGATAGTGTTGATTCTACTATGAAATGGGCTGTAGCAGAATCTGTAGTATATGGAGTGGTGGTAATAATTGCTATTATAGCAATAGTATATGCTATTATTCAGTGCTTGAAGAAAGCAGGAACAGCAATTCCGGCTTACACTCAGATTCCAACCAAAGAAAAGGAGAATCAAATATCTTCAAACTCATTACATTCAACCAATAAAATAGAAGTTGTAATACCACAAGATTCAAAAGCTGAATTTCCAACCATGGAAAGATTCTTAAGCAACATCAATAGAGAGAAACCAATTAGATTCACTCCTGAAAAACTTGATGAAATTACAAAAAACTACTCAACTATATTAGGTTCTGGTGCTTTTGGTGTTGTCTTCAAAGGAGAATTGCCAAATGGAGAAAATGTTGCTGTCAAAGTTCTAAATTATTTGGATATGGGAATGGAAGAGCAATTTAAAGCAGAAGTTAGCACAATTGGAAGAACTTATCATAATAATTTAGTCAAACTTTTTGGATTTTGCTTTCATCATGACACAAGAGCACTTGTTTATGAGTATGTTGAAAATGGTTCTCTAGATAAGTACTTATTTGGAAGCACGAATCGTGAAGTTGAGTTACGGAAGCTTCATGAGATTGCTATTGGAACAGCTAAAGGAATTGCTTATTTACATGAAGAATGTCAACATAGAATAATTCATTATGATATCAAACCAGAAAATGTTCTTCTTGATATGAATTTAGTACCAAAGATAGCTGATTTTGGATTAGCGAAGTTAAGAAGCAGAGAAAGTAAAATTGTTATGAATACTCATTTTAGAGGAACAAGAGGTTACGCGGCACCTGAAATGTGGAAGGCTTATCCAGTGACATATAAATGCGATGTTTATAGTTTCGGTATTCTTCTATTTGAAATTGTTGGCAGAAGAAGACATTTTGATTCGAGCTATAATGAATCGCAACAATGGTTTCCGAAATGGACTTGGGAAATGTTTGAGAATAATGAAATGATTGTTATGCTTGCACTTTGTGGAATTGAAGAGAAAGATAATGAGAGAGCCGAGAGAATGTTAAAGGTTGCTCTATGGTGTGTTCAATATTCACCAAATGATAGGCCTCAAATGAGTACTGTTGTGAAGATGTTAGAAGGTGAAATAGAAATTTCTTCACCTCCATTTCCCTTTGAAAATCTTGTGCCTGCAAAAGAAAATTTGATTACAGAAGGAAGCATTGCAGATTCTGATACAACTACTTCTTCGTGGAATACAGAATCTTTAAGAGAATTTGGTTTGAGAACCAAACACAATACATTTGAGATTGAAACATGTTTGGAATGA 1428 0.3396 MSFHYQFPDSPPTFYSTSDNFQSQAQTTFDRFGDSVDSTMKWAVAESVVYGVVVIIAIIAIVYAIIQCLKKAGTAIPAYTQIPTKEKENQISSNSLHSTNKIEVVIPQDSKAEFPTMERFLSNINREKPIRFTPEKLDEITKNYSTILGSGAFGVVFKGELPNGENVAVKVLNYLDMGMEEQFKAEVSTIGRTYHNNLVKLFGFCFHHDTRALVYEYVENGSLDKYLFGSTNREVELRKLHEIAIGTAKGIAYLHEECQHRIIHYDIKPENVLLDMNLVPKIADFGLAKLRSRESKIVMNTHFRGTRGYAAPEMWKAYPVTYKCDVYSFGILLFEIVGRRRHFDSSYNESQQWFPKWTWEMFENNEMIVMLALCGIEEKDNERAERMLKVALWCVQYSPNDRPQMSTVVKMLEGEIEISSPPFPFENLVPAKENLITEGSIADSDTTTSSWNTESLREFGLRTKHNTFEIETCLE 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02030 475 ProSiteProfiles Protein kinase domain profile. 142 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02030 475 Pfam Protein kinase domain 146 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02030 475 Gene3D Transferase(Phosphotransferase) domain 1 218 420 - -
Trre4g02030 475 SUPERFAMILY Protein kinase-like (PK-like) 122 413 IPR011009 -
Trre4g02030 475 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 39 423 - -
Trre4g02030 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Trre4g02030 475 ProSitePatterns Protein kinases ATP-binding region signature. 148 170 IPR017441 GO:0005524
Trre4g02030 475 FunFam Putative receptor-like protein kinase 218 420 - -
Trre4g02030 475 Gene3D Phosphorylase Kinase; domain 1 108 217 - -
Trre4g02030 475 SMART serkin_6 142 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02030 475 FunFam serine/threonine-protein kinase PBS1-like 112 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02030 Trre-Chr4 17171971 17174610 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02030 131 452 Receptor kinase-like Gene Family AT5G38280 39.514 1.20e-80 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Trre4g02030 Pkinase 8.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02030 - - aprc:113852543 672.93