Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02028 ATGGATAAATTTTTGGATGACATGGAAAAAGAGAAACCAATAAGATTCAGTGGTCAACAACTAAGTATTGCAACAGACAATTACTCCAACTTGTTGGGTTTAGGTGGATTTGGAAAAGTTTACAAAGGAATTTTTAGTAATGGAACAATGGTAGCTGTGAAGGTTTTACGCGATAGTTCTGGTAAAAAAACCGACGAACAATTTATGGCAAAAGTTGGAAAAATTGGTACAATTCATCATTTCAATCTTGTTAGGTTATATGGATTTTGCTTTGAAAAGGATTTAGTAGCACTTGTTTATGAATGCATGGTGAATGGATCACTTGATAGGTATCTATTCGACGAAAAAAAGGCGTTAGGATACGAAAAGCTTCATGAGATTGCAATTGGTCTGGCCAGAGGCATAGCTTACTTGCATGAATTCTGCGACCATAGAATAATTCACTATGATATAAAACCGGGAAATATTCTCTTGGATAAGAATTTCTATCCTAAAGTCGCTGATTTTGGTTTGGCCAAACTTCGCAACAGGGAAAATACACCTGGTTACGCCGCGCCTGAGCTGTGGATGCCATTTCCTGTAACTCACAAATGCGATGTTTATAGTTTTGGTATGCTTTTATTCGAAATAATTGGTAGGAGAAGAAACCTTGACATTAAGAATACCGAAAGCCAAGAGTGGTTTCCCATTTGGGTATGGAAAAAGGTTGATGCTGGACTATTAGAGGAAGCAATGATAGTTTGTGGAATTGAGGAAAAAAATAGAGAAATTGCTAAGAGAATGATTAAGGTAGCTTTATGGTGTGTTCAATATAGGCCAGAATTAAGGCCTATGATGAGTGAGGTGGTAAAAATGTTGGAAGGTGCATTAGAAGTTCCAAAGACTTTTAACCCATTTCAGTTTTTGATGGATGGGACTAATTTTGCTACTCATTCAGTCCCAGTGACAAATATCCATACAACTACTAATGATTCCAACATTGTATGA 987 0.3658 MDKFLDDMEKEKPIRFSGQQLSIATDNYSNLLGLGGFGKVYKGIFSNGTMVAVKVLRDSSGKKTDEQFMAKVGKIGTIHHFNLVRLYGFCFEKDLVALVYECMVNGSLDRYLFDEKKALGYEKLHEIAIGLARGIAYLHEFCDHRIIHYDIKPGNILLDKNFYPKVADFGLAKLRNRENTPGYAAPELWMPFPVTHKCDVYSFGMLLFEIIGRRRNLDIKNTESQEWFPIWVWKKVDAGLLEEAMIVCGIEEKNREIAKRMIKVALWCVQYRPELRPMMSEVVKMLEGALEVPKTFNPFQFLMDGTNFATHSVPVTNIHTTTNDSNIV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02028 328 PANTHER OS07G0415500 PROTEIN 4 297 - -
Trre4g02028 328 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02028 328 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02028 328 FunFam Os07g0541700 protein 103 187 - -
Trre4g02028 328 SMART serkin_6 26 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02028 328 SUPERFAMILY Protein kinase-like (PK-like) 12 287 IPR011009 -
Trre4g02028 328 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Trre4g02028 328 ProSitePatterns Protein kinases ATP-binding region signature. 32 54 IPR017441 GO:0005524
Trre4g02028 328 Gene3D Phosphorylase Kinase; domain 1 3 102 - -
Trre4g02028 328 Gene3D Transferase(Phosphotransferase) domain 1 103 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02028 Trre-Chr4 17136433 17137419 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02028 16 293 Receptor kinase-like Gene Family AT5G39030 45.000 2.93e-69 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Trre4g02028 Pkinase 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02028 - - gmx:100803355 516.153