Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02027 ATGTCATCCACGGATTCTACTACTACAATTGAGGTTGTTGTGGTCATAGTAATAGTTGCTATTAAGGTAGCTATTTTGGTTTGTGTGTGTAATAGAAGAAAACAAACAAGTGGTGGAACCATTAGTCCAGCAGATACACAATTTATAACACTCACTATGGATAAATTTCTAAACGACATGGAAAGAGAGAAACCAATAAGATTTAGTGGTCAACAACTAAGAATTGCAACAGACAATTACTCCAACTTGTTAGGGTCAGGTGGATTTGGAACAGTTTACAAAGGAATTTTTAGTAATGGAACAATGGTAGCCGTGAAGGTTTTACGCGGTAGTTCTGGCAAGAAAATTGACGAACAATTTATGGCGGAAGTTGGAACAATTGGTAGAATTCATCACTTTAATCTTGTTAGGTTATATGGATTTTGCTTTGAAAGAAATTTGATAGGACTTGTTTATGAATACATGGGGAATGGATCACTTGATAGGTATTTATTTGACGATAAAAAGGCGTTAGAATACGAAAAGCTTCATGAGATTGCAATTGGTACAGCGAGAGGAATAACATACTTGCATGAATTGTGCGACCCTAGAATAATCCACTACGATATAAAACCAGGAAATATACTCTTAGATAAGAATTTTTATCCTAAAGTTGCTGATTTTGGTTTGGCGAAACTTTGCAATAGGGAAAATACTCACATAACGATGACCGGAGGAAGAGGGACACCTGGTTACGCTGCACCTGAGCTTTGGATGCCGTTTCCTGTAACACACAAATGCGATGTTTATAGTTTTGGTATGCTATTATTCGAAATAATTGGTAGGAGAAGAAACCTTGACATTAAAAATACTGAAAGCCAAGAGTGGTTTCCAATTTGGGTTTGGAAAAAAGTTGATGCTGGACTATTAGAGGAAGCAATGATAGTTTGTGGTATAGAAGAAAAAAATAGAGAAATTGCTGAGAGAATGATTAAAGTAGCTTTATGGTGTGTTCAATATAGGCCAGAATTAAGGCCTATGATGAGTGATGTGGTAAAAATGTTGGAAGGTGCATTAGAAGTTCCAAAGACTTTTAATCCATTTCAATATTTGATGGATGGGACTAATTTTGCTACTCATTCAGTCCAAGTGACAAATACCTATACAACTACTAATGTTTCTTCCTCTGCCTCTTCTGTTATGGTAAGTGATTCCAACATTGTATGTGCTACTCCTATTATGAAGAAGTATGAGATTGAATTAGCATCTAGCATAGCATGA 1260 0.3587 MSSTDSTTTIEVVVVIVIVAIKVAILVCVCNRRKQTSGGTISPADTQFITLTMDKFLNDMEREKPIRFSGQQLRIATDNYSNLLGSGGFGTVYKGIFSNGTMVAVKVLRGSSGKKIDEQFMAEVGTIGRIHHFNLVRLYGFCFERNLIGLVYEYMGNGSLDRYLFDDKKALEYEKLHEIAIGTARGITYLHELCDPRIIHYDIKPGNILLDKNFYPKVADFGLAKLCNRENTHITMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGMLLFEIIGRRRNLDIKNTESQEWFPIWVWKKVDAGLLEEAMIVCGIEEKNREIAERMIKVALWCVQYRPELRPMMSDVVKMLEGALEVPKTFNPFQYLMDGTNFATHSVQVTNTYTTTNVSSSASSVMVSDSNIVCATPIMKKYEIELASSIA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02027 419 SUPERFAMILY Protein kinase-like (PK-like) 61 349 IPR011009 -
Trre4g02027 419 ProSiteProfiles Protein kinase domain profile. 78 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02027 419 FunFam serine/threonine-protein kinase PBS1-like 51 154 - -
Trre4g02027 419 SMART serkin_6 78 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02027 419 PANTHER OS07G0415500 PROTEIN 8 357 - -
Trre4g02027 419 FunFam Putative receptor-like protein kinase 155 356 - -
Trre4g02027 419 CDD STKc_IRAK 84 350 - -
Trre4g02027 419 Gene3D Phosphorylase Kinase; domain 1 52 154 - -
Trre4g02027 419 Gene3D Transferase(Phosphotransferase) domain 1 155 360 - -
Trre4g02027 419 Pfam Protein kinase domain 82 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g02027 419 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524
Trre4g02027 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02027 Trre-Chr4 17118870 17120243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02027 67 366 Receptor kinase-like Gene Family AT5G38280 41.853 2.74e-78 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Trre4g02027 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02027 - - gmx:100803355 634.024