Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02026 ATGCCTCTTCATGATAATCATCACAAATCAAAATTGAAAAGAAATCAGAACACAACCACCAATAAGAGTAAGAGAAATTCACATTTCTCTGCAAAGATGGAAGCTCCAAGTTCTCAGCATACTCAAATTATTGAAATAAGCGGAGAACTTCCTGATACAGGAAGGAAAATTTGCGGGGAAGCAACATGTGAGTTCTCAGATGCCGGATCCATATCGAAAGATTCGGAGGAACGATCAACTGCGATGCGGAAGCTTTTGATTGCCGTGTCCCTTTGCATTGTTTTCATGGCGGTTGAGGTAGTTGGTGGTATTAAGGCTAACAGCCTTGCAATATTGACTGATGCAGCACATCTGCTTTCAGATGTTGCAGCATTTGCGATCTCCTTATTTTCTATATGGGCTGGGGGATGGGAACCGAATCCTCGTCAGTCATTCGGATTTTTTCGAATTGAAATTCTTGGTGCTTTGGTTTCGATGCAATTAATATGGCTGCTTGCTGGAATTTTGGTATATGAAGCCATTGCTAGACTCATTGCAGGTCCTCAAAATGTGGATGGTTTTTTAATGTTTGTAGTTGCGGCATTCGGTCTTGTGGTTAACATCATTATGGCTTTGGTGTTGGGTCATGATCACGGCCACGGACATGGACATGATCATGGCCACGGACATGATCATCATGGCCACGGCCATGGTCTTTCAGTTTCTACCCATCGTGAAGTAAAGCATACAAAAGATGAGCATCATCACACGGAAGGCGATCACCCTCACCATCATGATGATGAAAAGCATTCAAAAGATGAACACCACCATACTCATGAAGATCATGCACATCATCATGACCATGACCACAAAGAGGTTACTGAACCACTTCTTGGCGAATCAAAAGCTAAATCCGAGAAAAAACGAAACATAAATGTACACGGGGCTTATCTCCATGTACTTGGGGACTCTATCCAGAGTATCGGAGTAATGATTGGTGGAGCAATCATATGGTATAAACCTGAATGGAAAATTGTTGATTTGATTTGTACTCTAATATTTTCTGTAGTTGTTTTGGCCACAACTATCAACATGCTGAGAAACATTTTGGAAGTCCTGATGGAAAGCACGCCACGTGAGATAGACGCTACTCAGCTTCAAAAGGGGCTATTGGAGATGGAAGATGTAGTGGCTGTTCATGAGCTGCACATATGGGCCATTACAGTTGGGAAGGTATTGCTAGCTTGTCATGTTAAAATCAATCCTGAAGCAGATGCTGACATAATGTTGGACAAGGTTATAGACTACATCAAGAGGGTTCATAACATTAGTCATGTAACTATACAGATAGAACGCTAG 1338 0.4185 MPLHDNHHKSKLKRNQNTTTNKSKRNSHFSAKMEAPSSQHTQIIEISGELPDTGRKICGEATCEFSDAGSISKDSEERSTAMRKLLIAVSLCIVFMAVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSIWAGGWEPNPRQSFGFFRIEILGALVSMQLIWLLAGILVYEAIARLIAGPQNVDGFLMFVVAAFGLVVNIIMALVLGHDHGHGHGHDHGHGHDHHGHGHGLSVSTHREVKHTKDEHHHTEGDHPHHHDDEKHSKDEHHHTHEDHAHHHDHDHKEVTEPLLGESKAKSEKKRNINVHGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIVDLICTLIFSVVVLATTINMLRNILEVLMESTPREIDATQLQKGLLEMEDVVAVHELHIWAITVGKVLLACHVKINPEADADIMLDKVIDYIKRVHNISHVTIQIER 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02026 445 NCBIfam cation diffusion facilitator family transporter 82 445 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Trre4g02026 445 MobiDBLite consensus disorder prediction 16 38 - -
Trre4g02026 445 Gene3D Cation efflux protein transmembrane domain 81 366 IPR027469 -
Trre4g02026 445 MobiDBLite consensus disorder prediction 1 38 - -
Trre4g02026 445 SUPERFAMILY Cation efflux protein transmembrane domain-like 79 368 IPR027469 -
Trre4g02026 445 MobiDBLite consensus disorder prediction 213 287 - -
Trre4g02026 445 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 374 444 IPR036837 -
Trre4g02026 445 Pfam Cation efflux family 85 367 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Trre4g02026 445 MobiDBLite consensus disorder prediction 225 287 - -
Trre4g02026 445 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 38 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02026 Trre-Chr4 17106862 17112900 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02026 33 445 Inorganic Solute Cotransporters AT2G46800 68.246 6.04e-176 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02026 K14689 - gmx:100794876 576.244