Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02025 ATGTTCTGTTTATGTCTCTATGATTTATATTTTGCAGTATGTGGTACTGTTGCTATACAAGATTTTACTGATGGTGGAGTCATCATCTTTCTGTTCTCCATTGCTCAGTGGCTTGAGTCAAGGGCAACTCACAAGGCAATGGTTGCAATGTCCTCTTTAACAAATATGGCTCCTCAAATGGCTATTGTTGCTGAGACCGGCGAACGCGTTGATGTCAATGATGTTAAGATCAACACCATCCTTGCAATAAAGGCTGGTGATGCTGTTCCTCTTGATGGAATTGTGGTGGAAGGAAAATGTGAAGTTGATGAAAAAATGTTAACAGGAGAATCATTCCCTGTTGCAAAAGAATTAGATTCACTTGTTTGGGCTGGAACTATTAATATGAATGGATATATAAGTGTAAGAACAACAGTGTTGGCAAAAGATACAGTAGTGGCAAAAATGTCAAGACTTGTTGAAGAAGCTTCTAGCAGAAAATCACAAGCACAAAGATTCATAGATAATTTTGCAAAGTATTATATTCCTGTGGTTGTGTTGATTTCAGCCAGCATTGCAGTAATTCCAGCTGCATTAAGAGTTCCTGATATTGAGCCTTGGTTTCATTTAGCACTTGTGGTTTTATTGAGTGGATGCCCTTGTGCTCTTATTCTCTCCACACCTGTTGCAATATTTTGTGCTCTCACAAAAGCTGCAATAAGTGGATTACTGTTGAAAGGTGGAGATTATCTTGAAACACTTTCTAGAATTAAGACAGTGGCTTTTGATAAAACAGGCACTATTACAAGAGGAGAGTTCATTGTAACAGATTTTAATGCTGCAGATGACATCAACAATGAAACATTATTGTACTGGATTTCAAGTATTGAGAGTAAATCAAGTCATCCAGTGGCAGGTGCCTTGGTGGAATATGCAATGTTGCATTCTATCAAACCAGTCCCAGAAAATGTGGAGAATTTTCAAAATTTTCCAGGGGAAGGAATTTCTGGTACAATTGATGGTAGGGATATCTATATAGGCAATAAGAGAATTGGTGTTAGAGCTGGCTGCAAAAAAGATGATTGTGATATACAATTTCAAGGACATGAAATTTCCTCCAAGAAACAATACTGTGGAGAAACTTTGGTTGGAGTTTTCAGCCTAGTTGATGCTTGTAGATCAGGTGCTTTAGAGGCAATGGAAGAGTTAAAGTTATTAGGTGTGAGATCAGTCATGCTGACAGGAGATAGCTCTCAGGTTGCTATGTATGTTCAGAGTCAGCTAAACAATGCTATAGACATTGTTCATGCAGAGCTTCTACCACATGAAAAGGCACAAATCATTGAGAATTTCAAGAAAGAAGGGCCAATAGCCATGATAGGAGATGGCATTAATGATGCACCTGCATTAGCTACAGCAGACATAGGCATCTCAATGGGAATTTCAGGTACAGCACTTGCAAACGAAACAAGTAACGCGATTCTCATGTCAAATGACATCCGAAAAGTGCCCGAAGCAATTCGTTTAGCGAGAAAAACAACTCGAAAACTCATAGAGAATGTCGTTATTTCGGTTGGATTCAAATGTGCCATACTTGCATTGGCAATTGCAGGATATCCATTGGTTTGGCTTGCAGTATTGACTGATGTTGGAACTTGTTTACTTGTGATTCTCAATAGCATGTTGATTTTACAACAAAATCATAAATATGATGAAAGAGAATCATCAAAGTCGAAATATGGTGATTTTTTGAAAGATAAGACTAAACCATTACTTAATAAGCAAAGTAATGTTGATGAGGAAAAAGGGTTGATTAGTAGTGAAGAGTGTGGTAAAGGGTGTTGTAAAAATGTCACTCATCATGTGGAAACTACAACATCAAGCAAAGATGAATCTTTTGGAGTTTCAAGTTTGAGATTACTTAAGGGAAATGATAATGGAAACTTTATGTTTGTTAAAATTCATGTTTTGATAGCTCAATGA 1962 0.3731 MFCLCLYDLYFAVCGTVAIQDFTDGGVIIFLFSIAQWLESRATHKAMVAMSSLTNMAPQMAIVAETGERVDVNDVKINTILAIKAGDAVPLDGIVVEGKCEVDEKMLTGESFPVAKELDSLVWAGTINMNGYISVRTTVLAKDTVVAKMSRLVEEASSRKSQAQRFIDNFAKYYIPVVVLISASIAVIPAALRVPDIEPWFHLALVVLLSGCPCALILSTPVAIFCALTKAAISGLLLKGGDYLETLSRIKTVAFDKTGTITRGEFIVTDFNAADDINNETLLYWISSIESKSSHPVAGALVEYAMLHSIKPVPENVENFQNFPGEGISGTIDGRDIYIGNKRIGVRAGCKKDDCDIQFQGHEISSKKQYCGETLVGVFSLVDACRSGALEAMEELKLLGVRSVMLTGDSSQVAMYVQSQLNNAIDIVHAELLPHEKAQIIENFKKEGPIAMIGDGINDAPALATADIGISMGISGTALANETSNAILMSNDIRKVPEAIRLARKTTRKLIENVVISVGFKCAILALAIAGYPLVWLAVLTDVGTCLLVILNSMLILQQNHKYDERESSKSKYGDFLKDKTKPLLNKQSNVDEEKGLISSEECGKGCCKNVTHHVETTTSSKDESFGVSSLRLLKGNDNGNFMFVKIHVLIAQ 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02025 653 CDD P-type_ATPase_HM 19 555 - -
Trre4g02025 653 Gene3D - 265 385 IPR023299 GO:0000166
Trre4g02025 653 NCBIfam HAD-IC family P-type ATPase 27 275 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre4g02025 653 NCBIfam HAD-IC family P-type ATPase 373 533 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre4g02025 653 FunFam Copper-transporting ATPase 1, putative 43 157 - -
Trre4g02025 653 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 10 559 - -
Trre4g02025 653 SUPERFAMILY HAD-like 252 554 IPR036412 -
Trre4g02025 653 Pfam haloacid dehalogenase-like hydrolase 250 467 - -
Trre4g02025 653 Pfam E1-E2 ATPase 64 232 - -
Trre4g02025 653 ProSitePatterns E1-E2 ATPases phosphorylation site. 256 262 IPR018303 -
Trre4g02025 653 NCBIfam heavy metal translocating P-type ATPase 11 555 IPR027256 GO:0006812|GO:0016020|GO:0019829
Trre4g02025 653 SFLD C1.7: P-type atpase like 237 506 - -
Trre4g02025 653 SUPERFAMILY Calcium ATPase, transmembrane domain M 7 248 IPR023298 -
Trre4g02025 653 FunFam Putative cadmium/zinc-transporting ATPase 3 265 385 - -
Trre4g02025 653 SFLD p-type atpase 237 506 IPR044492 -
Trre4g02025 653 PRINTS P-type cation-transporting ATPase superfamily signature 103 117 - -
Trre4g02025 653 PRINTS P-type cation-transporting ATPase superfamily signature 399 409 - -
Trre4g02025 653 PRINTS P-type cation-transporting ATPase superfamily signature 453 472 - -
Trre4g02025 653 PRINTS P-type cation-transporting ATPase superfamily signature 254 268 - -
Trre4g02025 653 PRINTS P-type cation-transporting ATPase superfamily signature 377 388 - -
Trre4g02025 653 PRINTS P-type cation-transporting ATPase superfamily signature 477 489 - -
Trre4g02025 653 Gene3D - 43 157 - -
Trre4g02025 653 Gene3D - 245 504 IPR023214 -
Trre4g02025 653 SUPERFAMILY Calcium ATPase, transduction domain A 67 153 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02025 Trre-Chr4 17098840 17105137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02025 13 625 Primary Pumps ATPases AT4G30110 59.295 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02025 K01534 - gmx:100815324 989.178