Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02014 ATGGCTGGAAGGTTGATTTCTTGTGCGATGCGGTTTCGAGGAGAACGATTGTGCATAACTGCATACAAGGTTCACATTGTACAACGAGGTGCTGTACGACCTTTGATAGATATGCTTCAGTCTCCCAATGTTCAGCTCAAAGAAATGTCTGCTTTTGCATTGGGAAGATTGGCACAGGACACACATAACCATGCTGGTATTGCACACACTAGCGGCTTAATGCCATTGCTGAAGCTTCTTGACTCAAAAAACAGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGAGAATGAGGATAATGTGCCCGACTTTATTAGAGTAGGTGGAATTAAGAGACTCCAGGTTTATTATTCAAGCAACTAA 375 0.4267 MAGRLISCAMRFRGERLCITAYKVHIVQRGAVRPLIDMLQSPNVQLKEMSAFALGRLAQDTHNHAGIAHTSGLMPLLKLLDSKNRSLQHNAAFALYGLAENEDNVPDFIRVGGIKRLQVYYSSN 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02014 124 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 21 118 IPR044282 -
Trre4g02014 124 SUPERFAMILY ARM repeat 22 118 IPR016024 -
Trre4g02014 124 Pfam Armadillo/beta-catenin-like repeat 23 58 IPR000225 GO:0005515
Trre4g02014 124 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 71 113 IPR000225 GO:0005515
Trre4g02014 124 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 30 72 IPR000225 GO:0005515
Trre4g02014 124 Gene3D - 16 123 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02014 Trre-Chr4 17045412 17047576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02014 23 117 U-box Gene Family AT5G40140 35.789 8.68e-12 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02014 - - psat:127102415 174.096