Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01992 ATGCCGTACAATGAATACTACAACAACAATAACAACAACATATGGGAGGTACAAAACCAAGCAGAAAGTGTTTCAATTTCCGGTTTAGATCAAGCAATACAACAAGAAGAACAAGCACAAGAACAACAACAACAACAACAACAACAAAGGAGGAAAGTGTTTCATTGTACAAATGAAGAACACATGCTTTTCTTGGAAGGTCTTCAAGTTTGCAAGAAAGGAAAGTGGAAAGAAATCTCTCAAAAATATGTAAAGACAAAGACTTCAACTCAAGTAGCAAGCCATGCTCAAAAGTATTTTAAAAGGCAACAACAAAAACTTGATGTTAAGAGCAAAGATATTAAAAGGAAACCTAGAAAAAGCATCCATGATAAGACGATTATTATGGATATTATGCCAGATACTCCAACTAATCAAAATCAAGTGATTCAACAAGTCAACAATAATGAAGCATCACTATCGTTCCCGATTCTCAACTCATTCGATGAAATAACGGCCATGTATGATAATTTTACCGAGGAAGATTTTGCCATGATTAATGACATCTTGAATGAAGATGGAGAAGTGACCGGAGTTAATCAAAATCAAGTGATTCAAGTCAACAACAATGAAGCATCACTATCATCCTCGATTCTCAACTCATTCGATGAAATATCGAACATATATGATAATTTTACTGAGGAAGATTTTGCCATGATTAATGACTTCTTGAATGAAGATGGAGAAGTGACCGGAGTTTCCTTTTAG 747 0.3454 MPYNEYYNNNNNNIWEVQNQAESVSISGLDQAIQQEEQAQEQQQQQQQQRRKVFHCTNEEHMLFLEGLQVCKKGKWKEISQKYVKTKTSTQVASHAQKYFKRQQQKLDVKSKDIKRKPRKSIHDKTIIMDIMPDTPTNQNQVIQQVNNNEASLSFPILNSFDEITAMYDNFTEEDFAMINDILNEDGEVTGVNQNQVIQVNNNEASLSSSILNSFDEISNIYDNFTEEDFAMINDFLNEDGEVTGVSF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01992 248 Pfam Myb-like DNA-binding domain 57 100 IPR001005 -
Trre4g01992 248 CDD SANT 57 100 IPR001005 -
Trre4g01992 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 104 IPR017930 -
Trre4g01992 248 Gene3D - 55 105 - -
Trre4g01992 248 PANTHER TRANSCRIPTION FACTOR KUA1 25 195 - -
Trre4g01992 248 Coils Coil 26 52 - -
Trre4g01992 248 ProSiteProfiles SANT domain profile. 57 104 IPR017884 -
Trre4g01992 248 SMART sant 52 102 IPR001005 -
Trre4g01992 248 NCBIfam myb-like DNA-binding domain, SHAQKYF class 56 103 IPR006447 GO:0003677
Trre4g01992 248 SUPERFAMILY Homeodomain-like 49 104 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01992 Trre-Chr4 16736419 16737272 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre4g01992 Myb_DNA-binding 4.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01992 - - mtr:11423031 106.686