Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01991 ATGCAACCTCTCTCAAATTCCATGCCATATATGTATAATTTCAACACACAAATGCCGTACAATGAATACTACAACAACAATAACAACAACATATGGGAGGTACAAAACCAAGCAGAAAGTGTTTCAATTTCCGGTTTAGATCAAGCAATACAACAAGAAGAACAAGCACAAGAACAACAACAACAACAACAACAACAAAGGAGGAAAGTGTTTCATTGTACAAATGAAGAACACATGCTTTTCTTGGAAGGTCTTCAAGTTTGCAAGAAAGGAAAGTGGAAAGAAATCTCTCAAAAATATGTAAAGACAAAGACTTCAACTCAAGTAGCAAGCCATGCTCAAAAGTATTTTAAAAGGCAACAACAAAAACTTGATGTTAAGAGCAAAGATATTAAAAGGAAACCTAGAAAAAGCATCCATGATAAGACGATTATTATGGATATTATGCCAGATACTCCAACTAATCAAAATCAAGTGATTCAACAAGTCAACAATAATGAAGCATCACTATCGTTCCCGATTCTCAACTCATTCGATGAAATAACGGCCATGTATGATAATTTTACCGAGGAAGATTTTGCCATGATTAATGACATCTTGAATGAAGATGGAGAAGTGACCGGAGTTAATCAAAATCAAGTGATTCAAGTCAACAACAATGAAGCATCACTATCATCCTCGATTCTCAACTCATTCGATGAAATATCGAACATATATGATAATTTTACTGAGGAAGATTTTGCCATGATTAATGACTTCTTGAATGAAGATGGAGAAGTGACCGGAGTTTCCTTTTAG 798 0.3446 MQPLSNSMPYMYNFNTQMPYNEYYNNNNNNIWEVQNQAESVSISGLDQAIQQEEQAQEQQQQQQQQRRKVFHCTNEEHMLFLEGLQVCKKGKWKEISQKYVKTKTSTQVASHAQKYFKRQQQKLDVKSKDIKRKPRKSIHDKTIIMDIMPDTPTNQNQVIQQVNNNEASLSFPILNSFDEITAMYDNFTEEDFAMINDILNEDGEVTGVNQNQVIQVNNNEASLSSSILNSFDEISNIYDNFTEEDFAMINDFLNEDGEVTGVSF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01991 265 ProSiteProfiles SANT domain profile. 74 121 IPR017884 -
Trre4g01991 265 SUPERFAMILY Homeodomain-like 66 121 IPR009057 -
Trre4g01991 265 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Trre4g01991 265 Coils Coil 43 69 - -
Trre4g01991 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 121 IPR017930 -
Trre4g01991 265 CDD SANT 74 117 IPR001005 -
Trre4g01991 265 Gene3D - 72 122 - -
Trre4g01991 265 SMART sant 69 119 IPR001005 -
Trre4g01991 265 PANTHER TRANSCRIPTION FACTOR KUA1 37 212 - -
Trre4g01991 265 NCBIfam myb-like DNA-binding domain, SHAQKYF class 73 120 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01991 Trre-Chr4 16736419 16737323 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre4g01991 Myb_DNA-binding 4.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01991 - - mtr:11423031 106.686