Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01972 ATGGAGATGAGCTGCCCATTAAATGTTAATAGCGACATCCCCGTGTGCTCTACTAGCACAGTTAATACTTCACACTCACACCAGAGTTTCTGTGGCTTTGTGCAACAGCCTTCTTTTGTGAGTGGATGGATGTATGTGAATGAACATGGACAAATGTGCGGTCCATATATTAAGGAGCAGTTATATGAGGGCCTAACTACAGGTTTCTTGCCATTTGAACTTCCTGTGTATCCTGTGATCAATGGCACAATAATGAACCCTGTACCATTGAATTATTTCAAACAGTTTCCTGACCATGTTTCCACCGGATTTACGTATCTGAGTATGGATTTATCAGACACAAGGATGTCTACAAATTGCTCCTCTTCTTCTCAGGATATGACGATATATGGGCACGAAAGATCTTTTGAGCTTGCTGCTCTTATGCCTGTTAACCCCGATTCAAAGTCTGTTTCACAGTCACATGTCAATGATTGCAACAGGGAATCCAATCACATGAATTTAAACTCTGAGGCATTCAGCAAGATAATTTCTTGTCAGATGTTGGGAGGAGAATGCTGTTGGCTTTATGAGGATAAAAAGGGTATGAAACATGGCCCACATTCCATTTCAGAACTGATTTCCTGGCACCACCATGGATATCTTGAAGATTCAACAGTGATCTCTCATTTTAACAATGAGTATGGAACCTTTGTGTTGCTGTCTGCTGTAAATGCATCGAAAGGAGATACATCTGGAACCATCCATGGATCAGATTCCAAAAGCAATGGAGTTGGTGATGTGATGAACTTAATTTATGAAATATCTGAAGACATTTCTTCCCAATTGCACATGGGTGTAATGAAAGCTTCCCGTAGAGTTATGCTAGATGGGATTATTGGCGACATCATTGCAGAATTTGTTGCTGCAAAGAAATGCAAGAAGCAAAAGCTTGAGTCTGCTGATCGAGCTTATGAAACTTGCATGTTGGACAATAAAATGATGAATAAAGGTACTTCCATTCCAAGTGAGCATGAACCTTCCCATATTATGGACAGTCAGGCTTGTCATGAAATTTCCAAACAGTCTTCAACGAGTGTTAAGTTAGTTGGAAGCATTGAAAATTTCTGGTGGTCATATGCTGCTGTTCGTAAAGAACTTCTTGATCGTTGCTTGCAAGATGTGTGGAATAAAGTGTTTTCTGACACGGTAACAGACTACTTTTTGTCCTGGAGGAAGAGGAAACTTTGGTCTCATCCTAAGCTTCAGTCATCTGTTAATGAATCTAAAGATTATGTTGAAAAGATTAAATCAAAATCTTTGGTTCTCAGGCCAGGTTCCTCTGTATGCAATGTTGATGCTAATATCCAGTCTGGAGTAATGGTGACACAAAGAGATGGTCATCCTGAGTTATTTGTATCTCCTAACAACCTCAAAAGTGAAAATATAGCAGAAGGTCAAAGAGTTTCATGCAGTTATCCTAACTCTAAAGATTTGACATGCATTCTTGAAAGTGTGCAGAACGAGCTTCACTTCTCTGCAAAGGCATCTTTAGCTGATTATGTTCGAAGTGTTGTTGAAAAGGAAGTAAACCAATTAATTCCTTCCCTAGAGAAAGGCAAATTTAGTGAGGTTGATGTTAGTGACTGCCGTATCTCAGAGATGCTTACCGGTAAAACATTTGTTAAAGAAATTCTAAATGATAAGTCCACCGATCCTGTGAAAAACGGAGACTCGATTTGTCTCCCTTCATCTGGAAACCACATGTCTAATGTATTCTCAAAAGCATTTCAAGAATTGTGTGGACATTCAAATGACGTGGCTGATGAAGAGGAGATTGGTGACCTACCACCTGGATTCGAGAAGAACTCTCAAACAATATTCCCACACCGCAATTCAAAATTTCGACCTTCAAGATTAGTTGAATGTAATCCTAAGATTACAGAATATGTTGCAGCTGCATTGTGCAGACAGAAGCTGCATGATGAAGTTCTAGAAGAGTGGAAGTTTTCAATTCTTGATTCTACAGTTAAGCAAATTTTTATGTCATCATGTACCTTAAAGAAAAAATTTCAGTCTCGTGGTCATGAGAAGGGGAAGTCATTGAGTGCAAGCAAGGAGCATTTGAATGATGCTACTTCGGAACTGGGAAAAGTGAAGGAAAGAACAAAAAGTTCCAGAGTTCCGCTGGCGACTGGAAAGCATACATATCACTGTAAGAAGCTGTCACGGAAAGAGTTACCCTTCTTTCAGCCAGTTGTTGAAGATAATTCAGGGCCAGGAAAGCAGCCTCTGGCTAAGTTAAGGAAACATGCTTCTGGAGATGTGAAGGAAAGTGCAGAAGTTAAAATAACTGCTATTAAACGTGGAACAGCTAAGATGATTAAAGGGAAGAAGGATACATCCTCTAAGAGCAGGTCTTCTGCCAATGTAGATAATAGCTCACACAGTGATCAATTATCCTTGAAGAATAAAACTAGCCAGAAAGTTTTGAAGTTGCGCAACGTGGTTACAGATGTTGTGAAGTCTAATGGGAAGAAGCTATCAGTGTCAACAGATAATAGTGTTGGTATGAAGGTGGTTAAAAGAAATAACTCTGATGGCACCATTCACAGGAAGACCAATGGTCATATCTCCCTAGAGAAACTAAATGACGGTGTTACAGATGTTGTGAAGTCTAATGGAAAGAAGCTATCAGTGTCAACAGATAACAGTGTTGGTAATAAGGTGGTTAAAAGAAATAACTCTGATGGCACCATTCACAGGAAGACCAATGGTCATATCTCCCTAGAGAAACTAAATGCGACAAATAAAGTATCAAAATCAAAAAGAAAGCATCAAACAGATGGTGTTACATCCTCACATCCTTCTAAGGTTTTGAAAATTTCAAATAAGGGTGCAAGTCTGGGAGCTAGCAAACAAGTAACTGAGGCACGGAGAAATTCTGCTGAATCCAAGTCATTGGATTTATGTCCTAGATCTAATGGATGTGCTAGGACTTCTATTAATGGGTGGGAATGGCGTAAGTGGTCTCAAAATGCTAGTCCTGCATGTAGAGCACGTGTGAGGGGTCTTCCGCGTTTACAAAACAAGCGTGTAGATTCTGAAAATAATTCATCCCAGTTGTCAAATGGTAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAATTGCGTAACCTTCTTGCTGCAGCTGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGGAAAAAGCGATTACGTTTTCAAAGGAGTAAGATTCACGACTGGGGTCTTGTTGCCTTGGAGCCAATAGAAGCAGAGGACTTTGTGATTGAATATATTGGAGAATTAATTCGCTCTCGGATATCTGATATACGAGAGCTTCAATATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTCAGACTTGATGATGGTTATGTGGTTGATGCTACAAAGAGAGGTGGGATTGCAAGATTTATTAACCATTCTTGTGAGCCCAACTGTTACACAAAGGTTATAGCTGTTGAGGGTGAAAAAAAGATTTTTATATATGCAAAACGGCATATAAAAGCTGGTGAAGAAATTACATATAATTATAAGTTTCCCTTGGAGGACAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGTGTCGCGGATCAATGAATTAG 3639 0.3963 MEMSCPLNVNSDIPVCSTSTVNTSHSHQSFCGFVQQPSFVSGWMYVNEHGQMCGPYIKEQLYEGLTTGFLPFELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFTYLSMDLSDTRMSTNCSSSSQDMTIYGHERSFELAALMPVNPDSKSVSQSHVNDCNRESNHMNLNSEAFSKIISCQMLGGECCWLYEDKKGMKHGPHSISELISWHHHGYLEDSTVISHFNNEYGTFVLLSAVNASKGDTSGTIHGSDSKSNGVGDVMNLIYEISEDISSQLHMGVMKASRRVMLDGIIGDIIAEFVAAKKCKKQKLESADRAYETCMLDNKMMNKGTSIPSEHEPSHIMDSQACHEISKQSSTSVKLVGSIENFWWSYAAVRKELLDRCLQDVWNKVFSDTVTDYFLSWRKRKLWSHPKLQSSVNESKDYVEKIKSKSLVLRPGSSVCNVDANIQSGVMVTQRDGHPELFVSPNNLKSENIAEGQRVSCSYPNSKDLTCILESVQNELHFSAKASLADYVRSVVEKEVNQLIPSLEKGKFSEVDVSDCRISEMLTGKTFVKEILNDKSTDPVKNGDSICLPSSGNHMSNVFSKAFQELCGHSNDVADEEEIGDLPPGFEKNSQTIFPHRNSKFRPSRLVECNPKITEYVAAALCRQKLHDEVLEEWKFSILDSTVKQIFMSSCTLKKKFQSRGHEKGKSLSASKEHLNDATSELGKVKERTKSSRVPLATGKHTYHCKKLSRKELPFFQPVVEDNSGPGKQPLAKLRKHASGDVKESAEVKITAIKRGTAKMIKGKKDTSSKSRSSANVDNSSHSDQLSLKNKTSQKVLKLRNVVTDVVKSNGKKLSVSTDNSVGMKVVKRNNSDGTIHRKTNGHISLEKLNDGVTDVVKSNGKKLSVSTDNSVGNKVVKRNNSDGTIHRKTNGHISLEKLNATNKVSKSKRKHQTDGVTSSHPSKVLKISNKGASLGASKQVTEARRNSAESKSLDLCPRSNGCARTSINGWEWRKWSQNASPACRARVRGLPRLQNKRVDSENNSSQLSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRSRISDIRELQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVIAVEGEKKIFIYAKRHIKAGEEITYNYKFPLEDKKIPCNCGSKKCRGSMN 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01972 1212 SUPERFAMILY SET domain 1069 1209 IPR046341 -
Trre4g01972 1212 ProSiteProfiles SET domain profile. 1073 1190 IPR001214 GO:0005515
Trre4g01972 1212 CDD SET_SETD1 1061 1208 IPR037841 GO:0042800|GO:0048188
Trre4g01972 1212 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 24 1212 IPR044570 GO:0042800|GO:0051568
Trre4g01972 1212 MobiDBLite consensus disorder prediction 799 819 - -
Trre4g01972 1212 MobiDBLite consensus disorder prediction 1022 1041 - -
Trre4g01972 1212 Gene3D SET domain 917 1212 IPR046341 -
Trre4g01972 1212 MobiDBLite consensus disorder prediction 746 765 - -
Trre4g01972 1212 ProSiteProfiles GYF domain profile. 185 235 IPR003169 GO:0005515
Trre4g01972 1212 Gene3D - 178 253 IPR035445 -
Trre4g01972 1212 SMART PostSET_3 1196 1212 IPR003616 -
Trre4g01972 1212 ProSiteProfiles Post-SET domain profile. 1196 1212 IPR003616 -
Trre4g01972 1212 MobiDBLite consensus disorder prediction 689 721 - -
Trre4g01972 1212 MobiDBLite consensus disorder prediction 786 819 - -
Trre4g01972 1212 MobiDBLite consensus disorder prediction 927 950 - -
Trre4g01972 1212 SMART set_7 1073 1196 IPR001214 GO:0005515
Trre4g01972 1212 Pfam SET domain 1085 1189 IPR001214 GO:0005515
Trre4g01972 1212 MobiDBLite consensus disorder prediction 1024 1041 - -
Trre4g01972 1212 SUPERFAMILY GYF domain 183 237 IPR035445 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01972 Trre-Chr4 16425091 16431786 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01972 1072 1212 C2H2 Transcription Factor Family AT2G23740 35.583 1.52e-17 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre4g01972 SET 4.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01972 - - ccaj:109804065 1576.99