Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01971 ATGGAGATGAGCTGCCCATTAAATGTTAATAGCGACATCCCCGTGTGCTCTACTAGCACAGTTAATACTTCACACTCACACCAGAGTTTCTGTGGCTTTGTGCAACAGCCTTCTTTTGTGAGTGGATGGATGTATGTGAATGAACATGGACAAATGTGCGGTCCATATATTAAGGAGCAGTTATATGAGGGCCTAACTACAGGTTTCTTGCCATTTGAACTTCCTGTGTATCCTGTGATCAATGGCACAATAATGAACCCTGTACCATTGAATTATTTCAAACAGTTTCCTGACCATGTTTCCACCGGATTTACGTATCTGAGTATGGATTTATCAGACACAAGGATGTCTACAAATTGCTCCTCTTCTTCTCAGGATATGACGATATATGGGCACGAAAGATCTTTTGAGCTTGCTGCTCTTATGCCTGTTAACCCCGATTCAAAGTCTGTTTCACAGTCACATGTCAATGATTGCAACAGGGAATCCAATCACATGAATTTAAACTCTGAGGCATTCAGCAAGATAATTTCTTGTCAGATGTTGGGAGGAGAATGCTGTTGGCTTTATGAGGATAAAAAGGGTATGAAACATGGCCCACATTCCATTTCAGAACTGATTTCCTGGCACCACCATGGATATCTTGAAGATTCAACAGTGATCTCTCATTTTAACAATGAGTATGGAACCTTTGTGTTGCTGTCTGCTGTAAATGCATCGAAAGGAGATACATCTGGAACCATCCATGGATCAGATTCCAAAAGCAATGGAGTTGGTGATGTGATGAACTTAATTTATGAAATATCTGAAGACATTTCTTCCCAATTGCACATGGGTGTAATGAAAGCTTCCCGTAGAGTTATGCTAGATGGGATTATTGGCGACATCATTGCAGAATTTGTTGCTGCAAAGAAATGCAAGAAGCAAAAGCTTGAGTCTGCTGATCGAGCTTATGAAACTTGCATGTTGGACAATAAAATGATGAATAAAGGTACTTCCATTCCAAGTGAGCATGAACCTTCCCATATTATGGACAGTCAGGCTTGTCATGAAATTTCCAAACAGTCTTCAACGAGTGTTAAGTTAGTTGGAAGCATTGAAAATTTCTGGTGGTCATATGCTGCTGTTCGTAAAGAACTTCTTGATCGTTGCTTGCAAGATGTGTGGAATAAAGTGTTTTCTGACACGGTAACAGACTACTTTTTGTCCTGGAGGAAGAGGAAACTTTGGTCTCATCCTAAGCTTCAGTCATCTGTTAATGAATCTAAAGATTATGTTGAAAAGATTAAATCAAAATCTTTGGTTCTCAGGCCAGGTTCCTCTGTATGCAATGTTGATGCTAATATCCAGTCTGGAGTAATGGTGACACAAAGAGATGGTCATCCTGAGTTATTTGTATCTCCTAACAACCTCAAAAGTGAAAATATAGCAGAAGGTCAAAGAGTTTCATGCAGTTATCCTAACTCTAAAGATTTGACATGCATTCTTGAAAGTGTGCAGAACGAGCTTCACTTCTCTGCAAAGGCATCTTTAGCTGATTATGTTCGAAGTGTTGTTGAAAAGGAAGTAAACCAATTAATTCCTTCCCTAGAGAAAGGCAAATTTAGTGAGGTTGATGTTAGTGACTGCCGTATCTCAGAGATGCTTACCGGTAAAACATTTGTTAAAGAAATTCTAAATGATAAGTCCACCGATCCTGTGAAAAACGGAGACTCGATTTGTCTCCCTTCATCTGGAAACCACATGTCTAATGTATTCTCAAAAGCATTTCAAGAATTGTGTGGACATTCAAATGACGTGGCTGATGAAGAGGAGATTGGTGACCTACCACCTGGATTCGAGAAGAACTCTCAAACAATATTCCCACACCGCAATTCAAAATTTCGACCTTCAAGATTAGTTGAATGTAATCCTAAGATTACAGAATATGTTGCAGCTGCATTGTGCAGACAGAAGCTGCATGATGAAGTTCTAGAAGAGTGGAAGTTTTCAATTCTTGATTCTACAGTTAAGCAAATTTTTATGTCATCATGTACCTTAAAGAAAAAATTTCAGTCTCGTGGTCATGAGAAGGGGAAGTCATTGAGTGCAAGCAAGGAGCATTTGAATGATGCTACTTCGGAACTGGGAAAAGTGAAGGAAAGAACAAAAAGTTCCAGAGTTCCGCTGGCGACTGGAAAGCATACATATCACTGTAAGAAGCTGTCACGGAAAGAGTTACCCTTCTTTCAGCCAGTTGTTGAAGATAATTCAGGGCCAGGAAAGCAGCCTCTGGCTAAGTTAAGGAAACATGCTTCTGGAGATGTGAAGGAAAGTGCAGAAGTTAAAATAACTGCTATTAAACGTGGAACAGCTAAGATGATTAAAGGGAAGAAGGATACATCCTCTAAGAGCAGGTCTTCTGCCAATGTAGATAATAGCTCACACAGTGATCAATTATCCTTGAAGAATAAAACTAGCCAGAAAGTTTTGAAGTTGCGCAGTACAGTTCAAAACGTGGTTACAGATGTTGTGAAGTCTAATGGGAAGAAGCTATCAGTGTCAACAGATAATAGTGTTGGTATGAAGGTGGTTAAAAGAAATAACTCTGATGGCACCATTCACAGGAAGACCAATGGTCATATCTCCCTAGAGAAACTAAATGCGACAAATAAAGTATCAAAATCAAAAAGAAAGCATCAAACAGATGGTGTTACATCCTCACATCCTTCTAAGGTTTTGAAAATTTCAAATAAGGGTGCAAGTCTGGGAGCTAGCAAACAAGTAACTGAGGCACGGAGAAATTCTGCTGAATCCAAGTCATTGGATTTATGTCCTAGATCTAATGGATGTGCTAGGACTTCTATTAATGGGTGGGAATGGCGTAAGTGGTCTCAAAATGCTAGTCCTGCATGTAGAGCACGTGTGAGGGGTCTTCCGCGTTTACAAAACAAGCGTGTAGATTCTGAAAATAATTCATCCCAGTTGTCAAATGGTAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAATTGCGTAACCTTCTTGCTGCAGCTGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGGAAAAAGCGATTACGTTTTCAAAGGAGTAAGATTCACGACTGGGGTCTTGTTGCCTTGGAGCCAATAGAAGCAGAGGACTTTGTGATTGAATATATTGGAGAATTAATTCGCTCTCGGATATCTGATATACGAGAGCTTCAATATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTCAGACTTGATGATGGTTATGTGGTTGATGCTACAAAGAGAGGTGGGATTGCAAGATTTATTAACCATTCTTGTGAGCCCAACTGTTACACAAAGGTTATAGCTGTTGAGGGTGAAAAAAAGATTTTTATATATGCAAAACGGCATATAAAAGCTGGTGAAGAAATTACATATAATTATAAGTTTCCCTTGGAGGACAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGTGTCGCGGATCAATGAATTAG 3501 0.3965 MEMSCPLNVNSDIPVCSTSTVNTSHSHQSFCGFVQQPSFVSGWMYVNEHGQMCGPYIKEQLYEGLTTGFLPFELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFTYLSMDLSDTRMSTNCSSSSQDMTIYGHERSFELAALMPVNPDSKSVSQSHVNDCNRESNHMNLNSEAFSKIISCQMLGGECCWLYEDKKGMKHGPHSISELISWHHHGYLEDSTVISHFNNEYGTFVLLSAVNASKGDTSGTIHGSDSKSNGVGDVMNLIYEISEDISSQLHMGVMKASRRVMLDGIIGDIIAEFVAAKKCKKQKLESADRAYETCMLDNKMMNKGTSIPSEHEPSHIMDSQACHEISKQSSTSVKLVGSIENFWWSYAAVRKELLDRCLQDVWNKVFSDTVTDYFLSWRKRKLWSHPKLQSSVNESKDYVEKIKSKSLVLRPGSSVCNVDANIQSGVMVTQRDGHPELFVSPNNLKSENIAEGQRVSCSYPNSKDLTCILESVQNELHFSAKASLADYVRSVVEKEVNQLIPSLEKGKFSEVDVSDCRISEMLTGKTFVKEILNDKSTDPVKNGDSICLPSSGNHMSNVFSKAFQELCGHSNDVADEEEIGDLPPGFEKNSQTIFPHRNSKFRPSRLVECNPKITEYVAAALCRQKLHDEVLEEWKFSILDSTVKQIFMSSCTLKKKFQSRGHEKGKSLSASKEHLNDATSELGKVKERTKSSRVPLATGKHTYHCKKLSRKELPFFQPVVEDNSGPGKQPLAKLRKHASGDVKESAEVKITAIKRGTAKMIKGKKDTSSKSRSSANVDNSSHSDQLSLKNKTSQKVLKLRSTVQNVVTDVVKSNGKKLSVSTDNSVGMKVVKRNNSDGTIHRKTNGHISLEKLNATNKVSKSKRKHQTDGVTSSHPSKVLKISNKGASLGASKQVTEARRNSAESKSLDLCPRSNGCARTSINGWEWRKWSQNASPACRARVRGLPRLQNKRVDSENNSSQLSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRSRISDIRELQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVIAVEGEKKIFIYAKRHIKAGEEITYNYKFPLEDKKIPCNCGSKKCRGSMN 1166
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01971 1166 SMART set_7 1027 1150 IPR001214 GO:0005515
Trre4g01971 1166 MobiDBLite consensus disorder prediction 884 904 - -
Trre4g01971 1166 ProSiteProfiles Post-SET domain profile. 1150 1166 IPR003616 -
Trre4g01971 1166 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 24 1166 IPR044570 GO:0042800|GO:0051568
Trre4g01971 1166 MobiDBLite consensus disorder prediction 799 819 - -
Trre4g01971 1166 Gene3D - 178 253 IPR035445 -
Trre4g01971 1166 Gene3D SET domain 870 1166 IPR046341 -
Trre4g01971 1166 SMART PostSET_3 1150 1166 IPR003616 -
Trre4g01971 1166 ProSiteProfiles GYF domain profile. 185 235 IPR003169 GO:0005515
Trre4g01971 1166 MobiDBLite consensus disorder prediction 978 995 - -
Trre4g01971 1166 CDD SET_SETD1 1015 1162 IPR037841 GO:0042800|GO:0048188
Trre4g01971 1166 ProSiteProfiles SET domain profile. 1027 1144 IPR001214 GO:0005515
Trre4g01971 1166 MobiDBLite consensus disorder prediction 976 995 - -
Trre4g01971 1166 MobiDBLite consensus disorder prediction 689 721 - -
Trre4g01971 1166 MobiDBLite consensus disorder prediction 786 819 - -
Trre4g01971 1166 Pfam SET domain 1039 1143 IPR001214 GO:0005515
Trre4g01971 1166 MobiDBLite consensus disorder prediction 746 766 - -
Trre4g01971 1166 SUPERFAMILY GYF domain 183 237 IPR035445 -
Trre4g01971 1166 SUPERFAMILY SET domain 1023 1163 IPR046341 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre4g01971 Trre-Chr4 16425091 16431786 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01971 1026 1166 C2H2 Transcription Factor Family AT2G23740 35.583 1.22e-17 87.0
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre4g01971 SET 4.5e-22 No_clan