Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01970 ATGGAGATGAGCTGCCCATTAAATGTTAATAGCGACATCCCCGTGTGCTCTACTAGCACAGTTAATACTTCACACTCACACCAGAGTTTCTGTGGCTTTGTGCAACAGCCTTCTTTTGTGAGTGGATGGATGTATGTGAATGAACATGGACAAATGTGCGGTCCATATATTAAGGAGCAGTTATATGAGGGCCTAACTACAGGTTTCTTGCCATTTGAACTTCCTGTGTATCCTGTGATCAATGGCACAATAATGAACCCTGTACCATTGAATTATTTCAAACAGTTTCCTGACCATGTTTCCACCGGATTTACGTATCTGAGTATGGATTTATCAGACACAAGGATGTCTACAAATTGCTCCTCTTCTTCTCAGGATATGACGATATATGGGCACGAAAGATCTTTTGAGCTTGCTGCTCTTATGCCTGTTAACCCCGATTCAAAGTCTGTTTCACAGTCACATGTCAATGATTGCAACAGGGAATCCAATCACATGAATTTAAACTCTGAGGCATTCAGCAAGATAATTTCTTGTCAGATGTTGGGAGGAGAATGCTGTTGGCTTTATGAGGATAAAAAGGGTATGAAACATGGCCCACATTCCATTTCAGAACTGATTTCCTGGCACCACCATGGATATCTTGAAGATTCAACAGTGATCTCTCATTTTAACAATGAGTATGGAACCTTTGTGTTGCTGTCTGCTGTAAATGCATCGAAAGGAGATACATCTGGAACCATCCATGGATCAGATTCCAAAAGCAATGGAGTTGGTGATGTGATGAACTTAATTTATGAAATATCTGAAGACATTTCTTCCCAATTGCACATGGGTGTAATGAAAGCTTCCCGTAGAGTTATGCTAGATGGGATTATTGGCGACATCATTGCAGAATTTGTTGCTGCAAAGAAATGCAAGAAGCAAAAGCTTGAGTCTGCTGATCGAGCTTATGAAACTTGCATGTTGGACAATAAAATGATGAATAAAGGTACTTCCATTCCAAGTGAGCATGAACCTTCCCATATTATGGACAGTCAGGCTTGTCATGAAATTTCCAAACAGTCTTCAACGAGTGTTAAGTTAGTTGGAAGCATTGAAAATTTCTGGTGGTCATATGCTGCTGTTCGTAAAGAACTTCTTGATCGTTGCTTGCAAGATGTGTGGAATAAAGTGTTTTCTGACACGGTAACAGACTACTTTTTGTCCTGGAGGAAGAGGAAACTTTGGTCTCATCCTAAGCTTCAGTCATCTGTTAATGAATCTAAAGATTATGTTGAAAAGATTAAATCAAAATCTTTGGTTCTCAGGCCAGGTTCCTCTGTATGCAATGTTGATGCTAATATCCAGTCTGGAGTAATGGTGACACAAAGAGATGGTCATCCTGAGTTATTTGTATCTCCTAACAACCTCAAAAGTGAAAATATAGCAGAAGGTCAAAGAGTTTCATGCAGTTATCCTAACTCTAAAGATTTGACATGCATTCTTGAAAGTGTGCAGAACGAGCTTCACTTCTCTGCAAAGGCATCTTTAGCTGATTATGTTCGAAGTGTTGTTGAAAAGGAAGTAAACCAATTAATTCCTTCCCTAGAGAAAGGCAAATTTAGTGAGGTTGATGTTAGTGACTGCCGTATCTCAGAGATGCTTACCGGTAAAACATTTGTTAAAGAAATTCTAAATGATAAGTCCACCGATCCTGTGAAAAACGGAGACTCGATTTGTCTCCCTTCATCTGGAAACCACATGTCTAATGTATTCTCAAAAGCATTTCAAGAATTGTGTGGACATTCAAATGACGTGGCTGATGAAGAGGAGATTGGTGACCTACCACCTGGATTCGAGAAGAACTCTCAAACAATATTCCCACACCGCAATTCAAAATTTCGACCTTCAAGATTAGTTGAATGTAATCCTAAGATTACAGAATATGTTGCAGCTGCATTGTGCAGACAGAAGCTGCATGATGAAGTTCTAGAAGAGTGGAAGTTTTCAATTCTTGATTCTACAGTTAAGCAAATTTTTATGTCATCATGTACCTTAAAGAAAAAATTTCAGTCTCGTGGTCATGAGAAGGGGAAGTCATTGAGTGCAAGCAAGGAGCATTTGAATGATGCTACTTCGGAACTGGGAAAAGTGAAGGAAAGAACAAAAAGTTCCAGAGTTCCGCTGGCGACTGGAAAGCATACATATCACTGTAAGAAGCTGTCACGGAAAGAGTTACCCTTCTTTCAGCCAGTTGTTGAAGATAATTCAGGGCCAGGAAAGCAGCCTCTGGCTAAGTTAAGGAAACATGCTTCTGGAGATGTGAAGGAAAGTGCAGAAGTTAAAATAACTGCTATTAAACGTGGAACAGCTAAGATGATTAAAGGGAAGAAGGATACATCCTCTAAGAGCAGGTCTTCTGCCAATGTAGATAATAGCTCACACAGTGATCAATTATCCTTGAAGAATAAAACTAGCCAGAAAGTTTTGAAGTTGCGCAGTACAGTTCAAAACGTGGTTACAGATGTTGTGAAGTCTAATGGGAAGAAGCTATCAGTGTCAACAGATAATAGTGTTGGTATGAAGGTGGTTAAAAGAAATAACTCTGATGGCACCATTCACAGGAAGACCAATGGTCATATCTCCCTAGAGAAACTAAATGACGGTGTTACAGATGTTGTGAAGTCTAATGGAAAGAAGCTATCAGTGTCAACAGATAACAGTGTTGGTAATAAGGTGGTTAAAAGAAATAACTCTGATGGCACCATTCACAGGAAGACCAATGGTCATATCTCCCTAGAGAAACTAAATGCGACAAATAAAGTATCAAAATCAAAAAGAAAGCATCAAACAGATGGTGTTACATCCTCACATCCTTCTAAGGTTTTGAAAATTTCAAATAAGGGTGCAAGTCTGGGAGCTAGCAAACAAGTAACTGAGGCACGGAGAAATTCTGCTGAATCCAAGTCATTGGATTTATGTCCTAGATCTAATGGATGTGCTAGGACTTCTATTAATGGGTGGGAATGGCGTAAGTGGTCTCAAAATGCTAGTCCTGCATGTAGAGCACGTGTGAGGGGTCTTCCGCGTTTACAAAACAAGCGTGTAGATTCTGAAAATAATTCATCCCAGTTGTCAAATGGTAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAATTGCGTAACCTTCTTGCTGCAGCTGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGGAAAAAGCGATTACGTTTTCAAAGGAGTAAGATTCACGACTGGGGTCTTGTTGCCTTGGAGCCAATAGAAGCAGAGGACTTTGTGATTGAATATATTGGAGAATTAATTCGCTCTCGGATATCTGATATACGAGAGCTTCAATATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTCAGACTTGATGATGGTTATGTGGTTGATGCTACAAAGAGAGGTGGGATTGCAAGATTTATTAACCATTCTTGTGAGCCCAACTGTTACACAAAGGTTATAGCTGTTGAGGGTGAAAAAAAGATTTTTATATATGCAAAACGGCATATAAAAGCTGGTGAAGAAATTACATATAATTATAAGTTTCCCTTGGAGGACAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGTGTCGCGGATCAATGAATTAG 3651 0.3961 MEMSCPLNVNSDIPVCSTSTVNTSHSHQSFCGFVQQPSFVSGWMYVNEHGQMCGPYIKEQLYEGLTTGFLPFELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFTYLSMDLSDTRMSTNCSSSSQDMTIYGHERSFELAALMPVNPDSKSVSQSHVNDCNRESNHMNLNSEAFSKIISCQMLGGECCWLYEDKKGMKHGPHSISELISWHHHGYLEDSTVISHFNNEYGTFVLLSAVNASKGDTSGTIHGSDSKSNGVGDVMNLIYEISEDISSQLHMGVMKASRRVMLDGIIGDIIAEFVAAKKCKKQKLESADRAYETCMLDNKMMNKGTSIPSEHEPSHIMDSQACHEISKQSSTSVKLVGSIENFWWSYAAVRKELLDRCLQDVWNKVFSDTVTDYFLSWRKRKLWSHPKLQSSVNESKDYVEKIKSKSLVLRPGSSVCNVDANIQSGVMVTQRDGHPELFVSPNNLKSENIAEGQRVSCSYPNSKDLTCILESVQNELHFSAKASLADYVRSVVEKEVNQLIPSLEKGKFSEVDVSDCRISEMLTGKTFVKEILNDKSTDPVKNGDSICLPSSGNHMSNVFSKAFQELCGHSNDVADEEEIGDLPPGFEKNSQTIFPHRNSKFRPSRLVECNPKITEYVAAALCRQKLHDEVLEEWKFSILDSTVKQIFMSSCTLKKKFQSRGHEKGKSLSASKEHLNDATSELGKVKERTKSSRVPLATGKHTYHCKKLSRKELPFFQPVVEDNSGPGKQPLAKLRKHASGDVKESAEVKITAIKRGTAKMIKGKKDTSSKSRSSANVDNSSHSDQLSLKNKTSQKVLKLRSTVQNVVTDVVKSNGKKLSVSTDNSVGMKVVKRNNSDGTIHRKTNGHISLEKLNDGVTDVVKSNGKKLSVSTDNSVGNKVVKRNNSDGTIHRKTNGHISLEKLNATNKVSKSKRKHQTDGVTSSHPSKVLKISNKGASLGASKQVTEARRNSAESKSLDLCPRSNGCARTSINGWEWRKWSQNASPACRARVRGLPRLQNKRVDSENNSSQLSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRSRISDIRELQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVIAVEGEKKIFIYAKRHIKAGEEITYNYKFPLEDKKIPCNCGSKKCRGSMN 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01970 1216 SUPERFAMILY SET domain 1073 1213 IPR046341 -
Trre4g01970 1216 CDD SET_SETD1 1065 1212 IPR037841 GO:0042800|GO:0048188
Trre4g01970 1216 SMART set_7 1077 1200 IPR001214 GO:0005515
Trre4g01970 1216 MobiDBLite consensus disorder prediction 799 819 - -
Trre4g01970 1216 MobiDBLite consensus disorder prediction 1026 1045 - -
Trre4g01970 1216 SMART PostSET_3 1200 1216 IPR003616 -
Trre4g01970 1216 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 24 1216 IPR044570 GO:0042800|GO:0051568
Trre4g01970 1216 MobiDBLite consensus disorder prediction 746 765 - -
Trre4g01970 1216 ProSiteProfiles GYF domain profile. 185 235 IPR003169 GO:0005515
Trre4g01970 1216 ProSiteProfiles Post-SET domain profile. 1200 1216 IPR003616 -
Trre4g01970 1216 MobiDBLite consensus disorder prediction 933 954 - -
Trre4g01970 1216 Gene3D - 178 253 IPR035445 -
Trre4g01970 1216 MobiDBLite consensus disorder prediction 689 721 - -
Trre4g01970 1216 MobiDBLite consensus disorder prediction 786 819 - -
Trre4g01970 1216 Gene3D SET domain 922 1216 IPR046341 -
Trre4g01970 1216 ProSiteProfiles SET domain profile. 1077 1194 IPR001214 GO:0005515
Trre4g01970 1216 Pfam SET domain 1089 1193 IPR001214 GO:0005515
Trre4g01970 1216 MobiDBLite consensus disorder prediction 1028 1045 - -
Trre4g01970 1216 SUPERFAMILY GYF domain 183 237 IPR035445 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01970 Trre-Chr4 16425091 16431786 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01970 1076 1216 C2H2 Transcription Factor Family AT2G23740 35.583 1.53e-17 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre4g01970 SET 4.7e-22 No_clan