Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01969 ATGGAGATGAGCTGCCCATTAAATGTTAATAGCGACATCCCCGTGTGCTCTACTAGCACAGTTAATACTTCACACTCACACCAGAGTTTCTGTGGCTTTGTGCAACAGCCTTCTTTTGTGAGTGGATGGATGTATGTGAATGAACATGGACAAATGTGCGGTCCATATATTAAGGAGCAGTTATATGAGGGCCTAACTACAGGTTTCTTGCCATTTGAACTTCCTGTGTATCCTGTGATCAATGGCACAATAATGAACCCTGTACCATTGAATTATTTCAAACAGTTTCCTGACCATGTTTCCACCGGATTTACGTATCTGAGTATGGATTTATCAGACACAAGGATGTCTACAAATTGCTCCTCTTCTTCTCAGGATATGACGATATATGGGCACGAAAGATCTTTTGAGCTTGCTGCTCTTATGCCTGTTAACCCCGATTCAAAGTCTGTTTCACAGTCACATGTCAATGATTGCAACAGGGAATCCAATCACATGAATTTAAACTCTGAGGCATTCAGCAAGATAATTTCTTGTCAGATGTTGGGAGGAGAATGCTGTTGGCTTTATGAGGATAAAAAGGGTATGAAACATGGCCCACATTCCATTTCAGAACTGATTTCCTGGCACCACCATGGATATCTTGAAGATTCAACAGTGATCTCTCATTTTAACAATGAGTATGGAACCTTTGTGTTGCTGTCTGCTGTAAATGCATCGAAAGGAGATACATCTGGAACCATCCATGGATCAGATTCCAAAAGCAATGGAGTTGGTGATGTGATGAACTTAATTTATGAAATATCTGAAGACATTTCTTCCCAATTGCACATGGGTGTAATGAAAGCTTCCCGTAGAGTTATGCTAGATGGGATTATTGGCGACATCATTGCAGAATTTGTTGCTGCAAAGAAATGCAAGAAGCAAAAGCTTGAGTCTGCTGATCGAGCTTATGAAACTTGCATGTTGGACAATAAAATGATGAATAAAGGTACTTCCATTCCAAGTGAGCATGAACCTTCCCATATTATGGACAGTCAGGCTTGTCATGAAATTTCCAAACAGTCTTCAACGAGTGTTAAGTTAGTTGGAAGCATTGAAAATTTCTGGTGGTCATATGCTGCTGTTCGTAAAGAACTTCTTGATCGTTGCTTGCAAGATGTGTGGAATAAAGTGTTTTCTGACACGGTAACAGACTACTTTTTGTCCTGGAGGAAGAGGAAACTTTGGTCTCATCCTAAGCTTCAGTCATCTGTTAATGAATCTAAAGATTATGTTGAAAAGATTAAATCAAAATCTTTGGTTCTCAGGCCAGGTTCCTCTGTATGCAATGTTGATGCTAATATCCAGTCTGGAGTAATGGTGACACAAAGAGATGGTCATCCTGAGTTATTTGTATCTCCTAACAACCTCAAAAGTGAAAATATAGCAGAAGGTCAAAGAGTTTCATGCAGTTATCCTAACTCTAAAGATTTGACATGCATTCTTGAAAGTGTGCAGAACGAGCTTCACTTCTCTGCAAAGGCATCTTTAGCTGATTATGTTCGAAGTGTTGTTGAAAAGGAAGTAAACCAATTAATTCCTTCCCTAGAGAAAGGCAAATTTAGTGAGTTGCAGGTTGATGTTAGTGACTGCCGTATCTCAGAGATGCTTACCGGTAAAACATTTGTTAAAGAAATTCTAAATGATAAGTCCACCGATCCTGTGAAAAACGGAGACTCGATTTGTCTCCCTTCATCTGGAAACCACATGTCTAATGTATTCTCAAAAGCATTTCAAGAATTGTGTGGACATTCAAATGACGTGGCTGATGAAGAGGAGATTGGTGACCTACCACCTGGATTCGAGAAGAACTCTCAAACAATATTCCCACACCGCAATTCAAAATTTCGACCTTCAAGATTAGTTGAATGTAATCCTAAGATTACAGAATATGTTGCAGCTGCATTGTGCAGACAGAAGCTGCATGATGAAGTTCTAGAAGAGTGGAAGTTTTCAATTCTTGATTCTACAGTTAAGCAAATTTTTATGTCATCATGTACCTTAAAGAAAAAATTTCAGTCTCGTGGTCATGAGAAGGGGAAGTCATTGAGTGCAAGCAAGGAGCATTTGAATGATGCTACTTCGGAACTGGGAAAAGTGAAGGAAAGAACAAAAAGTTCCAGAGTTCCGCTGGCGACTGGAAAGCATACATATCACTGTAAGAAGCTGTCACGGAAAGAGTTACCCTTCTTTCAGCCAGTTGTTGAAGATAATTCAGGGCCAGGAAAGCAGCCTCTGGCTAAGTTAAGGAAACATGCTTCTGGAGATGTGAAGGAAAGTGCAGAAGTTAAAATAACTGCTATTAAACGTGGAACAGCTAAGATGATTAAAGGGAAGAAGGATACATCCTCTAAGAGCAGGTCTTCTGCCAATGTAGATAATAGCTCACACAGTGATCAATTATCCTTGAAGAATAAAACTAGCCAGAAAGTTTTGAAGTTGCGCAGTACAGTTCAAAACGTGGTTACAGATGTTGTGAAGTCTAATGGGAAGAAGCTATCAGTGTCAACAGATAATAGTGTTGGTATGAAGGTGGTTAAAAGAAATAACTCTGATGGCACCATTCACAGGAAGACCAATGGTCATATCTCCCTAGAGAAACTAAATGACGGTGTTACAGATGTTGTGAAGTCTAATGGAAAGAAGCTATCAGTGTCAACAGATAACAGTGTTGGTAATAAGGTGGTTAAAAGAAATAACTCTGATGGCACCATTCACAGGAAGACCAATGGTCATATCTCCCTAGAGAAACTAAATGCGACAAATAAAGTATCAAAATCAAAAAGAAAGCATCAAACAGATGGTGTTACATCCTCACATCCTTCTAAGGTTTTGAAAATTTCAAATAAGGGTGCAAGTCTGGGAGCTAGCAAACAAGTAACTGAGGCACGGAGAAATTCTGCTGAATCCAAGTCATTGGATTTATGTCCTAGATCTAATGGATGTGCTAGGACTTCTATTAATGGGTGGGAATGGCGTAAGTGGTCTCAAAATGCTAGTCCTGCATGTAGAGCACGTGTGAGGGGTCTTCCGCGTTTACAAAACAAGCGTGTAGATTCTGAAAATAATTCATCCCAGTTGTCAAATGGTAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAATTGCGTAACCTTCTTGCTGCAGCTGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGGAAAAAGCGATTACGTTTTCAAAGGAGTAAGATTCACGACTGGGGTCTTGTTGCCTTGGAGCCAATAGAAGCAGAGGACTTTGTGATTGAATATATTGGAGAATTAATTCGCTCTCGGATATCTGATATACGAGAGCTTCAATATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTCAGACTTGATGATGGTTATGTGGTTGATGCTACAAAGAGAGGTGGGATTGCAAGATTTATTAACCATTCTTGTGAGCCCAACTGTTACACAAAGGTTATAGCTGTTGAGGGTGAAAAAAAGATTTTTATATATGCAAAACGGCATATAAAAGCTGGTGAAGAAATTACATATAATTATAAGTTTCCCTTGGAGGACAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGTGTCGCGGATCAATGAATTAG 3657 0.3962 MEMSCPLNVNSDIPVCSTSTVNTSHSHQSFCGFVQQPSFVSGWMYVNEHGQMCGPYIKEQLYEGLTTGFLPFELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFTYLSMDLSDTRMSTNCSSSSQDMTIYGHERSFELAALMPVNPDSKSVSQSHVNDCNRESNHMNLNSEAFSKIISCQMLGGECCWLYEDKKGMKHGPHSISELISWHHHGYLEDSTVISHFNNEYGTFVLLSAVNASKGDTSGTIHGSDSKSNGVGDVMNLIYEISEDISSQLHMGVMKASRRVMLDGIIGDIIAEFVAAKKCKKQKLESADRAYETCMLDNKMMNKGTSIPSEHEPSHIMDSQACHEISKQSSTSVKLVGSIENFWWSYAAVRKELLDRCLQDVWNKVFSDTVTDYFLSWRKRKLWSHPKLQSSVNESKDYVEKIKSKSLVLRPGSSVCNVDANIQSGVMVTQRDGHPELFVSPNNLKSENIAEGQRVSCSYPNSKDLTCILESVQNELHFSAKASLADYVRSVVEKEVNQLIPSLEKGKFSELQVDVSDCRISEMLTGKTFVKEILNDKSTDPVKNGDSICLPSSGNHMSNVFSKAFQELCGHSNDVADEEEIGDLPPGFEKNSQTIFPHRNSKFRPSRLVECNPKITEYVAAALCRQKLHDEVLEEWKFSILDSTVKQIFMSSCTLKKKFQSRGHEKGKSLSASKEHLNDATSELGKVKERTKSSRVPLATGKHTYHCKKLSRKELPFFQPVVEDNSGPGKQPLAKLRKHASGDVKESAEVKITAIKRGTAKMIKGKKDTSSKSRSSANVDNSSHSDQLSLKNKTSQKVLKLRSTVQNVVTDVVKSNGKKLSVSTDNSVGMKVVKRNNSDGTIHRKTNGHISLEKLNDGVTDVVKSNGKKLSVSTDNSVGNKVVKRNNSDGTIHRKTNGHISLEKLNATNKVSKSKRKHQTDGVTSSHPSKVLKISNKGASLGASKQVTEARRNSAESKSLDLCPRSNGCARTSINGWEWRKWSQNASPACRARVRGLPRLQNKRVDSENNSSQLSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRSRISDIRELQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVIAVEGEKKIFIYAKRHIKAGEEITYNYKFPLEDKKIPCNCGSKKCRGSMN 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01969 1218 Pfam SET domain 1091 1195 IPR001214 GO:0005515
Trre4g01969 1218 SUPERFAMILY SET domain 1075 1215 IPR046341 -
Trre4g01969 1218 MobiDBLite consensus disorder prediction 691 723 - -
Trre4g01969 1218 MobiDBLite consensus disorder prediction 788 821 - -
Trre4g01969 1218 MobiDBLite consensus disorder prediction 933 956 - -
Trre4g01969 1218 SMART set_7 1079 1202 IPR001214 GO:0005515
Trre4g01969 1218 SMART PostSET_3 1202 1218 IPR003616 -
Trre4g01969 1218 Gene3D - 178 253 IPR035445 -
Trre4g01969 1218 ProSiteProfiles GYF domain profile. 185 235 IPR003169 GO:0005515
Trre4g01969 1218 MobiDBLite consensus disorder prediction 1030 1047 - -
Trre4g01969 1218 ProSiteProfiles SET domain profile. 1079 1196 IPR001214 GO:0005515
Trre4g01969 1218 ProSiteProfiles Post-SET domain profile. 1202 1218 IPR003616 -
Trre4g01969 1218 CDD SET_SETD1 1067 1214 IPR037841 GO:0042800|GO:0048188
Trre4g01969 1218 MobiDBLite consensus disorder prediction 801 821 - -
Trre4g01969 1218 MobiDBLite consensus disorder prediction 1028 1047 - -
Trre4g01969 1218 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 24 1218 IPR044570 GO:0042800|GO:0051568
Trre4g01969 1218 MobiDBLite consensus disorder prediction 748 767 - -
Trre4g01969 1218 Gene3D SET domain 924 1218 IPR046341 -
Trre4g01969 1218 SUPERFAMILY GYF domain 183 237 IPR035445 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01969 Trre-Chr4 16425091 16431786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01969 1078 1218 C2H2 Transcription Factor Family AT2G23740 35.583 1.51e-17 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre4g01969 SET 4.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01969 - - gmx:100805708 1577.76