Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01960 ATGGCGCCCGGTGTAAGAGACTTACAGCTAACATGCACCACTTCCACCGGCCGGAAAATTGCTTCCACCGATGACATGGAAAACGTACGGCTGCTAGACTCCGACGATAGAATTGACGATGAAATTAGAAGAATTCAGATTAGAGTCTCTGGCATGACATGCACCGCTTGCTCAAATTCAATCGAATCAGCTCTTAAAGCCATTGACGGTGTTATCACTGCTTCTGTTGCTTTACTACAGAACAAAGCTGATGTTGTTTTTAACCCTTCTCTACTCAAGGACGAAGACATTAAAAATGCAATTGAAGATGCAGGGTTCGAAGCAGACATATTACCTGAATCTAGTGCACAGGGAAAGATTCCACTTGAAACCCTGGTTGGACAGTTCACTATTGGAGGTATGACATGTGCAGCCTGTGTAAATTCTGTTGAAAGTATTTTGAGAGATCTTCCAGGGGTTAAAAGGGCTGTGGTAGCTTTGGCCACTTCATTGGGCGAAGTTGAATATGATCCAAGTGTAATTAGTAAAGACGATATAGTCAATGCAATTGAAGATTCTGGCTTTGAAGCCTCTTTTGTACAGAGCAACGAACAAGATAAAATTATTTTTGGAGTTGTTGGCGTGTTCAATGTAATAGATTCACAAGTTTTAGAAGGCATGCTCAGTAACATGAAAGGAGTAAGGCAGTTTCGTTTTGACCAGATATCGGGTGAATTAGATGTTTTGTTTGATCCTCAAGTTCTCAGTCCTAGGTCTTTAGTTGATGGGATACATGAGGAAAGCAATGGAAAGTTTGAGTTACATGTTAGAAGCCCTTATACAAGGATGACTTCTAAAGATGTTGAAGAGACCTCAACTATATTTCGGCTCTTTATCTCCAGCCTGTGTCTTAGTGTTCCTCTCTTCTTTATGAAGGTAGTTTGTCCTCATATTCCGTTTATGTATTCCCTGTTACTTCGGCGATGTGGGCCTTTTCTCATGGGTGATTGGGTGAAATGGGCATTGGTGAGTGTCATCCAATTTGGGATTGGGAAGCGCTTTTATATCGCAGCTGGCAGGGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTGATTGCTGTGGGAACTACCGCCTCTTATGTTTATTCTGTTTATGCTCTTCTATATGGCGCTCTTACTGGATTTTGGTCCCCAACTTACTTTGAAACAAGTGCTATGCTTATAACATTTGTTTTGTTGGGGAAGTATTTGGAAGTCCTTGCTAAGGGAAAGACATCTGATGCCATAAAAAAATTAGTAGAACTTGCTCCTGCAACAGCTTTATTGATCGTTAATGATAAAGATGGTAAATCTATGGAAGAAAGGGAAATTGATTCTTTGCTCGTTCAACCGGGTGACACATTGAAAGTTCTTCCTGGTACGAAGATTCCTGCTGATGGTATTGTTACTTGGGGCTCAAGTTATGTAAATGAAAGCATGGTAACTGGTGAGTCTGTACCTGTTTTGAAGGAGGTGAATGTTTCAGTTATTGGGGGTACAATAAATTTGCATGGCGTTCTTCACATTAAAGCTACCAAAATAGGATCTGATACAGTTTTGAGTCAGATAATCAGTTTGGTTGAAACAGCACAGATGTCCAAAGCTCCCATTCAGAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCGACTGTTATTTCTTTGGCATTATTGACATTTTTGTGTTGGTATATTGCTGGATCTATCGGAGCTTACCCAGATGAATGGCTTCCAGAAAATGGAACTCACTTTGTGTTTGCCCTAATGTTCTCAATATCTGTAGTGGTGATTGCCTGTCCTTGTGCACTTGGCTTGGCAACACCAACAGCTGTCATGGTGGCAACAGGTGTTGGTGCAAACAATGGAGTATTAATTAAAGGAGGAGATGCTTTGGAAAGAGCTCAGATGGTGAAGTATGTGATATTTGATAAAACAGGCACTCTAACTCAGGGAAAAGCCAGTGTTACTACTGCTAAGGTATTCACTGGAATGCAACGTGGGGAATTTCTTACTTTGGTGGCTTCTGCGGAGGCTAGCAGTGAACACCCATTGGCAAAAGCAGTATTAGCATATGCACGCCACTTTCATTTCTTTGATGATTCTTCAGCTACTACAGAGAATGATGCAAAGTCTGGGTGGCTTTTTGATGTCTCAGACTTCTCTGCTCTTCCAGGAAGAGGTGTTCAATGCATTATAAATGGACGGCGTATTTTGGTTGGCAACAGGAATTTGATGGTAGAAAGTGTTATAGATATTTCAACAGAAGTGGAAAATTTTGTGGTTGAGCTGGAACAAACTGCACAGACAGGGATACTAGTATCGTATGATGATATATTAATCGGAGTTTTGGGGGTTGCAGACCCATTAAAGAGAGAAGCATCTGTGGTTATAGAGGGCCTCCAGAAAATGGGAGTCACACCTGTTATGGTTACAGGAGATAACTGGCGAACAGCTCGTGCTGTTGCCAAGGAGGTTGGAATCCAAGATGTGAGAGCAGAGGTGATGCCTGCGGGAAAAGCCGAAATTGTCCGTTCATTCCAAAAGGATGGAAGCATAGTCGCAATGGTGGGCGATGGCATCAACGATTCTCCGGCATTAGCAGCTGCTGATGTTGGCATGGCGATTGGAGCTGGAACCGATGTTGCAATAGAAGCTGCTAACTTTGTTTTGATGAGAAATAACTTGGAAGATGTGATCACAGCAATCCATCTTTCCCGAAAGACGTTTTCTCGTATTAGATTGAATTACATATTTGCAATGGGTTACAATGTTGTTGCTATACCAGTTGCGGCTGGAGTTTTATATCCTTCACTAGGGATCAAGCTGCCACCATGGGTTTCCGGTGCATGCATGGCTCTCTCTTCTGTAAGTGTTGTATGCTCTTCGTTGCTTCTTAAAAGATATAGAAGACCGAAACTTACCACAGTCCTTGAAATAGTTGTAGAATAA 2970 0.4178 MAPGVRDLQLTCTTSTGRKIASTDDMENVRLLDSDDRIDDEIRRIQIRVSGMTCTACSNSIESALKAIDGVITASVALLQNKADVVFNPSLLKDEDIKNAIEDAGFEADILPESSAQGKIPLETLVGQFTIGGMTCAACVNSVESILRDLPGVKRAVVALATSLGEVEYDPSVISKDDIVNAIEDSGFEASFVQSNEQDKIIFGVVGVFNVIDSQVLEGMLSNMKGVRQFRFDQISGELDVLFDPQVLSPRSLVDGIHEESNGKFELHVRSPYTRMTSKDVEETSTIFRLFISSLCLSVPLFFMKVVCPHIPFMYSLLLRRCGPFLMGDWVKWALVSVIQFGIGKRFYIAAGRALRNGSTNMDVLIAVGTTASYVYSVYALLYGALTGFWSPTYFETSAMLITFVLLGKYLEVLAKGKTSDAIKKLVELAPATALLIVNDKDGKSMEEREIDSLLVQPGDTLKVLPGTKIPADGIVTWGSSYVNESMVTGESVPVLKEVNVSVIGGTINLHGVLHIKATKIGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVISLALLTFLCWYIAGSIGAYPDEWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQMVKYVIFDKTGTLTQGKASVTTAKVFTGMQRGEFLTLVASAEASSEHPLAKAVLAYARHFHFFDDSSATTENDAKSGWLFDVSDFSALPGRGVQCIINGRRILVGNRNLMVESVIDISTEVENFVVELEQTAQTGILVSYDDILIGVLGVADPLKREASVVIEGLQKMGVTPVMVTGDNWRTARAVAKEVGIQDVRAEVMPAGKAEIVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDVAIEAANFVLMRNNLEDVITAIHLSRKTFSRIRLNYIFAMGYNVVAIPVAAGVLYPSLGIKLPPWVSGACMALSSVSVVCSSLLLKRYRRPKLTTVLEIVVE 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01960 989 Pfam haloacid dehalogenase-like hydrolase 644 877 - -
Trre4g01960 989 ProSiteProfiles Heavy-metal-associated domain profile. 125 191 IPR006121 GO:0046872
Trre4g01960 989 ProSitePatterns Heavy-metal-associated domain. 131 160 IPR017969 GO:0046872
Trre4g01960 989 FunFam Copper-exporting P-type ATPase 659 796 - -
Trre4g01960 989 CDD P-type_ATPase_Cu-like 289 959 - -
Trre4g01960 989 FunFam Copper-exporting P-type ATPase A 41 111 - -
Trre4g01960 989 Gene3D - 42 113 - -
Trre4g01960 989 FunFam Copper-transporting ATPase 1, putative 416 538 - -
Trre4g01960 989 NCBIfam copper ion binding protein 128 190 IPR006122 GO:0005507
Trre4g01960 989 NCBIfam copper ion binding protein 45 108 IPR006122 GO:0005507
Trre4g01960 989 ProSitePatterns E1-E2 ATPases phosphorylation site. 650 656 IPR018303 -
Trre4g01960 989 ProSitePatterns Heavy-metal-associated domain. 49 79 IPR017969 GO:0046872
Trre4g01960 989 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 25 985 - -
Trre4g01960 989 Gene3D - 416 538 - -
Trre4g01960 989 NCBIfam HAD-IC family P-type ATPase 401 675 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre4g01960 989 NCBIfam HAD-IC family P-type ATPase 726 943 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre4g01960 989 PRINTS P-type cation-transporting ATPase superfamily signature 886 898 - -
Trre4g01960 989 PRINTS P-type cation-transporting ATPase superfamily signature 484 498 - -
Trre4g01960 989 PRINTS P-type cation-transporting ATPase superfamily signature 863 882 - -
Trre4g01960 989 PRINTS P-type cation-transporting ATPase superfamily signature 788 799 - -
Trre4g01960 989 PRINTS P-type cation-transporting ATPase superfamily signature 648 662 - -
Trre4g01960 989 PRINTS P-type cation-transporting ATPase superfamily signature 810 820 - -
Trre4g01960 989 SUPERFAMILY Calcium ATPase, transduction domain A 448 534 IPR008250 -
Trre4g01960 989 ProSiteProfiles Heavy-metal-associated domain profile. 43 109 IPR006121 GO:0046872
Trre4g01960 989 SUPERFAMILY HMA, heavy metal-associated domain 128 197 IPR036163 GO:0046872
Trre4g01960 989 SFLD p-type atpase 630 915 IPR044492 -
Trre4g01960 989 SUPERFAMILY Calcium ATPase, transmembrane domain M 386 938 IPR023298 -
Trre4g01960 989 FunFam Copper-exporting P-type ATPase A 123 193 - -
Trre4g01960 989 PRINTS H+-transporting ATPase (proton pump) signature 835 851 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre4g01960 989 PRINTS H+-transporting ATPase (proton pump) signature 894 919 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre4g01960 989 PRINTS H+-transporting ATPase (proton pump) signature 863 879 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre4g01960 989 Pfam Heavy-metal-associated domain 129 189 IPR006121 GO:0046872
Trre4g01960 989 Pfam Heavy-metal-associated domain 47 107 IPR006121 GO:0046872
Trre4g01960 989 Gene3D - 127 192 - -
Trre4g01960 989 FunFam Probable copper-transporting ATPase HMA5 770 920 - -
Trre4g01960 989 SUPERFAMILY HMA, heavy metal-associated domain 39 112 IPR036163 GO:0046872
Trre4g01960 989 Gene3D - 615 920 IPR023214 -
Trre4g01960 989 NCBIfam heavy metal translocating P-type ATPase 362 972 IPR027256 GO:0006812|GO:0016020|GO:0019829
Trre4g01960 989 CDD HMA 128 191 IPR006121 GO:0046872
Trre4g01960 989 Gene3D - 655 742 IPR023299 GO:0000166
Trre4g01960 989 Gene3D - 743 794 IPR023299 GO:0000166
Trre4g01960 989 CDD HMA 46 108 IPR006121 GO:0046872
Trre4g01960 989 SFLD C1.7: P-type atpase like 630 915 - -
Trre4g01960 989 SUPERFAMILY HAD-like 647 969 IPR036412 -
Trre4g01960 989 Pfam E1-E2 ATPase 429 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01960 Trre-Chr4 16345640 16351768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01960 1 989 Primary Pumps ATPases AT5G44790 73.413 0.0 1495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01960 K17686 - gmx:100804960 1649.03