Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01956 ATGGTACTTGTAGCAGCTATAGTTTGTGCTTTACTTTGTGCTCTTGGCCTAAACACAATGTTACAATGTGTGTTCCAATGCGCGAACCGTGTCCTTACCGAACCTCTACAATGGTTCACTTCTCGAAGGTGCAATTCCGGACTCAAGAAGAAAGAAATGGTTGCTTTGCCAACATCAATTTATAATACTCATTCAGCTGAATCAACTCCTCCATCATTGGATTCTAGTTGTGCCATTTGCTTAGCTGAATTTTGTGATGGTGATAACATGAAGTTGCTACCAAAGTGTAATCATCGTTTTCATGTTGTTTCTATTGATATGTGTCCTGTTTTTGCAAATATTCACTACTATTTTGATGATAGTGCAAGGGTCAGAAGATTTTATATTGTTTCTAAGGCTCATGAAGTTGATTCTTTTAGTATCATGATAGCGAGAATGTGGGATTTCTAG 450 0.3756 MVLVAAIVCALLCALGLNTMLQCVFQCANRVLTEPLQWFTSRRCNSGLKKKEMVALPTSIYNTHSAESTPPSLDSSCAICLAEFCDGDNMKLLPKCNHRFHVVSIDMCPVFANIHYYFDDSARVRRFYIVSKAHEVDSFSIMIARMWDF 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01956 149 PANTHER RING-H2 FINGER PROTEIN ATL78 2 107 IPR044602 GO:0016567|GO:0016740
Trre4g01956 149 Pfam RING-like zinc finger 77 102 IPR001841 -
Trre4g01956 149 SUPERFAMILY RING/U-box 76 109 - -
Trre4g01956 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 111 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01956 Trre-Chr4 16324330 16326456 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01956 1 106 C3H Transcription Factor Family AT3G10910 35.652 4.36e-18 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01956 - - psat:127138077 180.259