Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01950 ATGGCTGAAATTCACTCTCAAACTCCAACAATTAGTCCCACAATAAGCAAACCATGTACCAATCCTCCTACACAACATGGTCTCAATTCTATGGTTCTAGTAGCAGCTATAGTTTGTGCTTTACTTTGTGCTCTTGGCCTAAACACAATGTTACAATGTGTGTTCCAATGCGCGAACCGTGTCCTTACCGAACCTCTACAATGGTTCACTTCTCGAAGGCGCAATTCTGGACTCAAGAAGAAAGAAATGATTGCTTTGCCAACATCAATTTATAAAACTCATTCAGCTGGATCAACTCCTCCATCTTTGGATTCTATTTGTGCCATTTGCTTAGCTGAATTTTGTGATGGTGATAACATGAAGTTGCTACCAAAGTGTAATCATCGTTTTCATGTTGTTTGTATTGATATGTGGTTACTTTCTCATTCTTCTTGTCCTAATTGTAGGGAAATGATTAAGTCCAATGATTCTATGCATTGCTTAAGCATTGTCATATCATAG 501 0.3812 MAEIHSQTPTISPTISKPCTNPPTQHGLNSMVLVAAIVCALLCALGLNTMLQCVFQCANRVLTEPLQWFTSRRRNSGLKKKEMIALPTSIYKTHSAGSTPPSLDSICAICLAEFCDGDNMKLLPKCNHRFHVVCIDMWLLSHSSCPNCREMIKSNDSMHCLSIVIS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01950 166 SUPERFAMILY RING/U-box 106 155 - -
Trre4g01950 166 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Trre4g01950 166 PANTHER RING-H2 FINGER PROTEIN ATL78 21 154 IPR044602 GO:0016567|GO:0016740
Trre4g01950 166 SMART ring_2 107 148 IPR001841 -
Trre4g01950 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 155 IPR013083 -
Trre4g01950 166 Pfam Ring finger domain 107 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01950 Trre-Chr4 16302537 16303037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01950 11 150 C3H Transcription Factor Family AT3G10910 37.975 5.05e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01950 - - psat:127138077 289.271