Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01945 ATGATATATGGAGAAACAAATGGTGTTAGTGATTGGCACTTGGAGCTTCTTAAAGATTATGCTTCTATAGATGATGAATATTTACATTCTGTAACATTTCAAGAACCTCAACATGAACCATTGCCTGATCAAATCAATAATATTGATGATGAGTGTTTTCCATCTGAAGGGCAAATATTTAACAGTGATGATGAAGCTTATGAATTTTATCGTTTATTTGCACGAAAAAATGGATTTTCGATTAGGCGTGAACACGTTTACAACTCTGTTAAACACCAGTCTGAGATGAATCCATTGGGTATTTATAAAAGGGAATTTGTTTGTCATCGTAGTGGTATTGTTAAACACCGCAAAACTAATGAAGTGGACTGCCAAAGGAACCGAAAATCTTCAAGATGTAATTGTAGTGCAAAGATGTTGGTTGCTATCAGTACAATTGGCATTGAGGAAAAATGGGTGGTTAAATATTTCAACAATGATCACAACCATGAGTTATTGGATGACAAAGAGGTTCAATTTCTTCCTGCTTATCGTAGCATACCAATTGTTGATCAAAGTCGTATAATGTTGTTGTCGAAAGCTGGTTGCACTATAAGTCTTATCATGAGAGTGTTGCTGTCAAAATTAGAAATCAAGCTGGAGAAGAGGCAAGAATGCGTCAAAAGTATCACAATCTTGAAATTAGAACATGTTTTCCTATTGAGGAACATGCTGCATCTATTCTCACACCATTTATTTGCCTTTGAGTTGCTCCAACATGAGATTGAATTAGCTACAAAATATGCTAATAAGATCACTAAGGGTTGGAGATAG 813 0.3506 MIYGETNGVSDWHLELLKDYASIDDEYLHSVTFQEPQHEPLPDQINNIDDECFPSEGQIFNSDDEAYEFYRLFARKNGFSIRREHVYNSVKHQSEMNPLGIYKREFVCHRSGIVKHRKTNEVDCQRNRKSSRCNCSAKMLVAISTIGIEEKWVVKYFNNDHNHELLDDKEVQFLPAYRSIPIVDQSRIMLLSKAGCTISLIMRVLLSKLEIKLEKRQECVKSITILKLEHVFLLRNMLHLFSHHLFAFELLQHEIELATKYANKITKGWR 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01945 270 Pfam FAR1 DNA-binding domain 68 166 IPR004330 -
Trre4g01945 270 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 43 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01945 Trre-Chr4 16263088 16263991 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre4g01945 FAR1 1e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01945 - - tpra:123922871 367.081