Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01936 ATGGATTCAGATTCAGTCAAAGTGATATCAACAAGTACAATCCAAGCACCACCAATTCACAACTCAACAACAACAACAACAAAAAATTCTCATCAAATAATAAATTTAACACCATGGGATCTTCAATTTCTCCCACTTGGTACAATCCAAAAAGGCCTTCTTTTCCACCAACCAATTCCCACACAAAACCAAATCAACCATCTCAAACAAACCCTTTCCACAACTCTCTCCTTTTTCCCACCCTTAACAGGTCGTCTCATAATCACACACCACAACAACACCACCACACCAAACAACACATCATGTTCCATCATTTGTAACAACCTTGGTGTTCTCTTCATTCATGCCAAAGCAAACAACACTTCCATAACTAACATTCTTCAACCAAACAACAACTTCATAGTACCTCCCATTGTTCACTCATTTTTCCCACTTAACGGCGTTAAAAACTACCAAGCTACTTCACAGTCACAACCAATTCTAGCTATCCAATTAACAGAGTTAACTAACGGTATCTTCATTGGTTTCACTCTTAACCACGTTGTTTCTGACGGTAAATCTTTTTGGCATTTCGTTAATTCTTGGTCACAAATCTCGAAAAGTTCTCACAAAATTACCAAAATACCCTCGCTTCAACGTTGGTTCCCAAACAACATTGAAACTCCAATACTTTTCCCTTTCACAATAACAGAATCAAAAGATCAACAATGCTCGAAGCTTCCAGAAAGATTCTTCCATTTTACGAAAGCGAAACTAGAAGAATTGAAATCAAAAGCTAATGAAGAGGCCAACACGGACAAAACTAAAACAAATATAATCTCTTCGCTTCAAGCGCTATTATCTCATGTTTGGCGTTCGGTTGTTCGATGCAAAGAACTCGATCCACAAGAAGATTTTCGGTATGTGTTGATAATAGGAGTTAGACCAAGGATGAATCCGCCACTTGACGAGGATTATTTTGGAAATGCTGCAATGGTTGGTGATGTGAGGATGAAAGTAGGGGAGGTTATGGAATGTGGGATTGGAAAAGTTGCTCTGGAGATGAATAAGATGATTGCATTACATTCTCATGAGAAAATAAAGAATGATTATGAGTGTTGGTTGAGAATGCCGAGGTTGTTTTCGATTGGTAATTTGACGAGTGGTAATTCATTGGTGACGAGTAGTTCTCCGAGGTTTGATGTTTATGGTAATGATTTTGGTTGGGGGAAGCCTGTTGCGGTTCGAAGTGGGGGTGCGAATAAAAATAATGGGAAGATTACTTTGTTTGCAGGGGTTGATGAAGGTAGTATTGATGTTGAAGTTTGTCTTTCTTATGAGATTTTGGAGGCTTTGGGAAATGACACTGAGTTTGTGGTTCCAATTTCTAAGTAA 1374 0.385 MDSDSVKVISTSTIQAPPIHNSTTTTTKNSHQIINLTPWDLQFLPLGTIQKGLLFHQPIPTQNQINHLKQTLSTTLSFFPPLTGRLIITHHNNTTTPNNTSCSIICNNLGVLFIHAKANNTSITNILQPNNNFIVPPIVHSFFPLNGVKNYQATSQSQPILAIQLTELTNGIFIGFTLNHVVSDGKSFWHFVNSWSQISKSSHKITKIPSLQRWFPNNIETPILFPFTITESKDQQCSKLPERFFHFTKAKLEELKSKANEEANTDKTKTNIISSLQALLSHVWRSVVRCKELDPQEDFRYVLIIGVRPRMNPPLDEDYFGNAAMVGDVRMKVGEVMECGIGKVALEMNKMIALHSHEKIKNDYECWLRMPRLFSIGNLTSGNSLVTSSSPRFDVYGNDFGWGKPVAVRSGGANKNNGKITLFAGVDEGSIDVEVCLSYEILEALGNDTEFVVPISK 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01936 457 Coils Coil 249 269 - -
Trre4g01936 457 Gene3D - 228 447 IPR023213 -
Trre4g01936 457 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 23 451 - -
Trre4g01936 457 Gene3D - 4 223 IPR023213 -
Trre4g01936 457 Pfam Transferase family 28 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01936 Trre-Chr4 16211778 16213151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01936 53 440 Monolignol Biosynthesis Gene Families AT5G48930 25.238 5.72e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01936 - - gmx:100500257 511.146