Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01920 ATGGCTTCTTCTTTTCCACTTTACCAATCAACACCACCATGTTTCTTCTCAAAAACCCAGTTTAAAGGTTTGCGCCATGGCTATTTGTGGCGACCCAATTACTCTTTTGGCTCTTCTGTTGAACACAAAGTACATCCTGTTAAAGCAGCTTCTGTTGAAGCTGCTCAATTTCCATTGCTTCAGCCTCCTAAGGTTGATGATTCACCTCCGGAGTTGGAGCCTGTGGATCCTGATTTCTACAGGATAGGATACGTCCGAAGTATGCGAGCTTATGGAGTTGATTTTAAGGAAGGGCCAAATGGTTTTGGTGTGTATGCTTCTAAAGATGTCGAACCTCTTCGTCGACCAAGGGTTATAATGGAAATTCCTCTCGAATTGATGCTAACCATAAGCAAGAAGCTCCCATGGATGTTTTTCCCTGATATAATTCCGCTTGGTCATCCAATATTTGATATTATCAATTCAACAAATCCAGAGACAGATTGGGATTTAAGATTAGCATGCCTTCTCTTGTTCTCATTTGACTGCAAAGACAACTTTTGGCAGTATTACGGCGATTTCTTACCAAGTGCAGATGAAAGTACTAGCTTACTTCTAGCTACAGAGGAGGAACTTTTGGAGCTGCAGGATCCCGATCTTGCTTCTAAAGTGAGAATTCAACAACGGCGAGCCTTAGAGTTTTGGGAGAAGAATTGGCATAGTGGTGTGCCTCTAAAAGTAAAACGTCTTGCTCGTGAACCACAACGTTTTATTTGGGCAGTAGGAATTGCACAGTCACGATGTATCAATATGCAAATGAGAATGTGTGCACTAACTCAAGAGGCAAATATGTTGATTCCTTATGCCGATATGTTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGCGTTTTAAGGACAGGATGCTTGAGGTTCTTATAAATGCTGGACAACAGATTAGAAAGGGAGATGAGATGACAGTTGATTACATGAGTGCGCAGAAGAATGACATGTTAATGCTAAGATATGGATTTTCATCGCCAGTGAATCCTTGGGATGCGATAAAATTCTCAGGCAATGCACGAATCCATTTGGATTCCTTCTTGTCAGTCTTCAACATATCAGGCCTACCTGAAGAGTATTATCGTAACGAAGTTCTATCAAACGCTGGAGATACTTTTGTTGATGGAGCGGTCATAGCTGCAGCACGAACATTGCCAACATGGTCGGACGGAGATATTCCTCCAATCCCAAGTGAAGAAAGGAAGGCTGTTAAGGCATTACAACAAGAATGCAAAAAAATGCTCGCAGAATTTGCTACCACCTCTAAGCAAGACCATAAATTATTAGATGCATCGCCCGAAGCTAGAAGAACTCTTGAAGCTGCAATAAAGTATAGATTGCACCGAAAATTATTGATAGAGAAAGTTATCCTAGCATTGGAGATTTATCAAGAACAAATACTGTTTTGA 1455 0.4089 MASSFPLYQSTPPCFFSKTQFKGLRHGYLWRPNYSFGSSVEHKVHPVKAASVEAAQFPLLQPPKVDDSPPELEPVDPDFYRIGYVRSMRAYGVDFKEGPNGFGVYASKDVEPLRRPRVIMEIPLELMLTISKKLPWMFFPDIIPLGHPIFDIINSTNPETDWDLRLACLLLFSFDCKDNFWQYYGDFLPSADESTSLLLATEEELLELQDPDLASKVRIQQRRALEFWEKNWHSGVPLKVKRLAREPQRFIWAVGIAQSRCINMQMRMCALTQEANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGQQIRKGDEMTVDYMSAQKNDMLMLRYGFSSPVNPWDAIKFSGNARIHLDSFLSVFNISGLPEEYYRNEVLSNAGDTFVDGAVIAAARTLPTWSDGDIPPIPSEERKAVKALQQECKKMLAEFATTSKQDHKLLDASPEARRTLEAAIKYRLHRKLLIEKVILALEIYQEQILF 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01920 484 CDD SET_LSMT 92 339 - -
Trre4g01920 484 FunFam Plastid transcriptionally active 14 361 481 - -
Trre4g01920 484 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 336 476 IPR036464 -
Trre4g01920 484 Gene3D set domain protein methyltransferase, domain 1 85 339 - -
Trre4g01920 484 ProSiteProfiles SET domain profile. 80 325 IPR001214 GO:0005515
Trre4g01920 484 Coils Coil 419 439 - -
Trre4g01920 484 Pfam SET domain 101 324 IPR001214 GO:0005515
Trre4g01920 484 SUPERFAMILY SET domain 100 340 IPR046341 -
Trre4g01920 484 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 70 452 - -
Trre4g01920 484 Pfam Rubisco LSMT substrate-binding 413 465 IPR015353 -
Trre4g01920 484 Gene3D - 359 482 IPR036464 -
Trre4g01920 484 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 85 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01920 Trre-Chr4 16109958 16114714 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre4g01920 SET 1.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01920 - - tpra:123887006 897.501