Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01919 ATGGCTCATTTTCAGATGTGTCCACCTGAGTCACACGCTACAAAGACTACACCAAATCTTGCAAAAAAAAGAAAACGTGAAGATACATGTGTGGTTGATGAAGAATATGGTTTAGGTGATGCGAAAGAATGCGAGGAAAATCAGTCACCATTTTTAAGTGTTGCGAAAAGTGCTATGCACGAAATATTACGTCTCCTGTCTAATATTGATAAATCCTTATGGAGAAACAATATAAATGAAGAAGTTGGATTTATTCTTGATAAAAAAAGGTATATGAATTTGAATTCAATATTTTCAAAATTGATATCTTCTGATAGGCGTGAAGAGTCTTCGAAAGCAGAGCTGATAGTCCGGAGCAGCGGAAAACATTTGGTCGAATTGATTTTAGATTCGGAAAAATGGGCAAAACTGTTTCCAACAATTGTTTCAAATGCTAGAACTGTGAAAGTATTTAATGTTGGTGCACATGGAAATCGAAATGGAGCCTTACAAGCGATGGTTGGAGAAATGCACATCCTTTCACCCTTGGTACCACCTCGAGAGTTCTACTTCATCCGTTATTGTCGACAATTTAGCGATAGGGATTGGGTGATAGTTGACGTGTCAGGTGATTTCCAATTCGAGCGCGCTAATGTTCGCAATCCGGCTTACAAACTTCCCTCTGGGTGTTTGATTCGTGAAATGCCAGATGGAAAATCTAAGGTTACTTGGATTGAGCATGTGATGGTGAATGAAATGAGCCAAGAATTGATGCTATACAAAGATCTCATTTATGAGTATAATCCTTTTGGAGCAAAACTATGGCTTTATGCACTTCAAAGAATGTGTGAGAAAAAATATTTTTCTTCAATTGAATATTTTCCCAAACATGAAAATGATAGAGAGATTAGGTCAAAAGAAGGGAGAAAAAGTGTGATGAACCTTTCTAATCGAATGATTCAAAGCTTTTGCAAAGATTTGAACAGGGCAAAGATGAACCATATTTTGACACATGACACAAATGAATATAATATTCATTTAACTTCAGAGATTACTAACCCTAATGCGATTCGTTTGAAATGTCGCTCCAATTCAAATGGCATGGTTGTCACTGCAACGGGATCTGTTAGGCTTCATATTCCTCCACAAACTATTTTTCACTTTCTTAGTGATGAAAAAAGACGACCAGAGTGGGATAGTCTTGTTGGCGAAAGAGAAGTGCATGAAGTTGCCTACATCTCAATAGGAGAAAGAGAAATTCAATCTTACAACCGCATTTCAATTCTTGAGATATATAATGACGATGGTGGTGATGATGATGATGACGACGAGGAGGAGGACGATAACAATGTGCAAATTTTTCAAGAAGTTTGTATTGATCCTATGGGAGCTTATGTTGTGTATGCTCCAATAGGTACAAAAAATACGCATAAGATCTTAAATGAAGAAAACTCATCAGATTTTGGAATTCTTCCTTGGGGTTTCATGATCTCAAGAGATGGACATTTTGAAGATGATAATAATGATACATCTGGAAGTGATCATCATAAACAAAAGGGATCATTGGTTACATTTTCTTTCCAAGTTTTAGTTCCTGCTGAAGCACCACTTGGAGTAACCATGGAATCTTTAAATTCAATATTCACCGCAACAATTGAAAAGATTCAAAATGCTTTGGATTGTGAAGATGATGATTAA 1677 0.3643 MAHFQMCPPESHATKTTPNLAKKRKREDTCVVDEEYGLGDAKECEENQSPFLSVAKSAMHEILRLLSNIDKSLWRNNINEEVGFILDKKRYMNLNSIFSKLISSDRREESSKAELIVRSSGKHLVELILDSEKWAKLFPTIVSNARTVKVFNVGAHGNRNGALQAMVGEMHILSPLVPPREFYFIRYCRQFSDRDWVIVDVSGDFQFERANVRNPAYKLPSGCLIREMPDGKSKVTWIEHVMVNEMSQELMLYKDLIYEYNPFGAKLWLYALQRMCEKKYFSSIEYFPKHENDREIRSKEGRKSVMNLSNRMIQSFCKDLNRAKMNHILTHDTNEYNIHLTSEITNPNAIRLKCRSNSNGMVVTATGSVRLHIPPQTIFHFLSDEKRRPEWDSLVGEREVHEVAYISIGEREIQSYNRISILEIYNDDGGDDDDDDEEEDDNNVQIFQEVCIDPMGAYVVYAPIGTKNTHKILNEENSSDFGILPWGFMISRDGHFEDDNNDTSGSDHHKQKGSLVTFSFQVLVPAEAPLGVTMESLNSIFTATIEKIQNALDCEDDD 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01919 558 MobiDBLite consensus disorder prediction 1 21 - -
Trre4g01919 558 Gene3D - 292 404 IPR023393 -
Trre4g01919 558 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 31 552 IPR042160 -
Trre4g01919 558 Gene3D - 51 257 IPR023393 -
Trre4g01919 558 ProSiteProfiles START domain profile. 44 281 IPR002913 GO:0008289
Trre4g01919 558 SMART START_1 64 278 IPR002913 GO:0008289
Trre4g01919 558 CDD START_ArGLABRA2_like 48 277 - -
Trre4g01919 558 SUPERFAMILY Bet v1-like 51 278 - -
Trre4g01919 558 SUPERFAMILY Bet v1-like 300 403 - -
Trre4g01919 558 Pfam START domain 110 278 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01919 Trre-Chr4 16098255 16101518 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01919 45 554 Homeobox Transcription Factor Family AT1G17920 33.333 5.43e-84 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01919 K09338 - aprc:113852280 353.984