Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01918 ATGGATAGTTCAAAGAAAAACAAACAACCCTACAAGTTCACTCAGCATCAAGAAACGAAACTACTAGGATTTTTGAAGTGTTGTCCACATCCAAATGAAGCTCAATTACAAGGATATGCCAAGGAGCTTGGAATTGAGCCTGAACAAATTAAATATTGGTTTCATAAGAGAACCCAAACAAAGATGTGTCCACCTGAGTCACACGCTACAAAGACTACACCAAATCTTGCAAAAAAAAGAAAACGTGAAGATACATGTGTGGTTGATGAAGAATATGGTTTAGGTGATGCGAAAGAATGCGAGGAAAATCAGTCACCATTTTTAAGTGTTGCGAAAAGTGCTATGCACGAAATATTACGTCTCCTGTCTAATATTGATAAATCCTTATGGAGAAACAATATAAATGAAGAAGTTGGATTTATTCTTGATAAAAAAAGGTATATGAATTTGAATTCAATATTTTCAAAATTGATATCTTCTGATAGGCGTGAAGAGTCTTCGAAAGCAGAGCTGATAGTCCGGAGCAGCGGAAAACATTTGGTCGAATTGATTTTAGATTCGGAAAAATGGGCAAAACTGTTTCCAACAATTGTTTCAAATGCTAGAACTGTGAAAGTATTTAATGTTGGTGCACATGGAAATCGAAATGGAGCCTTACAAGCGATGGTTGGAGAAATGCACATCCTTTCACCCTTGGTACCACCTCGAGAGTTCTACTTCATCCGTTATTGTCGACAATTTAGCGATAGGGATTGGGTGATAGTTGACGTGTCAGGTGATTTCCAATTCGAGCGCGCTAATGTTCGCAATCCGGCTTACAAACTTCCCTCTGGGTGTTTGATTCGTGAAATGCCAGATGGAAAATCTAAGGTTACTTGGATTGAGCATGTGATGGTGAATGAAATGAGCCAAGAATTGATGCTATACAAAGATCTCATTTATGAGTATAATCCTTTTGGAGCAAAACTATGGCTTTATGCACTTCAAAGAATGTGTGAGAAAAAATATTTTTCTTCAATTGAATATTTTCCCAAACATGAAAATGATAGAGAGATTAGGTCAAAAGAAGGGAGAAAAAGTGTGATGAACCTTTCTAATCGAATGATTCAAAGCTTTTGCAAAGATTTGAACAGGGCAAAGATGAACCATATTTTGACACATGACACAAATGAATATAATATTCATTTAACTTCAGAGATTACTAACCCTAATGCGATTCGTTTGAAATGTCGCTCCAATTCAAATGGCATGGTTGTCACTGCAACGGGATCTGTTAGGCTTCATATTCCTCCACAAACTATTTTTCACTTTCTTAGTGATGAAAAAAGACGACCAGAGTGGGATAGTCTTGTTGGCGAAAGAGAAGTGCATGAAGTTGCCTACATCTCAATAGGAGAAAGAGAAATTCAATCTTACAACCGCATTTCAATTCTTGAGATATATAATGACGATGGTGGTGATGATGATGATGACGACGAGGAGGAGGACGATAACAATGTGCAAATTTTTCAAGAAGTTTGTATTGATCCTATGGGAGCTTATGTTGTGTATGCTCCAATAGGTACAAAAAATACGCATAAGATCTTAAATGAAGAAAACTCATCAGATTTTGGAATTCTTCCTTGGGGTTTCATGATCTCAAGAGATGGACATTTTGAAGATGATAATAATGATACATCTGGAAGTGATCATCATAAACAAAAGGGATCATTGGTTACATTTTCTTTCCAAGTTTTAGTTCCTGCTGAAGCACCACTTGGAGTAACCATGGAATCTTTAAATTCAATATTCACCGCAACAATTGAAAAGATTCAAAATGCTTTGGATTGTGAAGATGATGATTAA 1845 0.3637 MDSSKKNKQPYKFTQHQETKLLGFLKCCPHPNEAQLQGYAKELGIEPEQIKYWFHKRTQTKMCPPESHATKTTPNLAKKRKREDTCVVDEEYGLGDAKECEENQSPFLSVAKSAMHEILRLLSNIDKSLWRNNINEEVGFILDKKRYMNLNSIFSKLISSDRREESSKAELIVRSSGKHLVELILDSEKWAKLFPTIVSNARTVKVFNVGAHGNRNGALQAMVGEMHILSPLVPPREFYFIRYCRQFSDRDWVIVDVSGDFQFERANVRNPAYKLPSGCLIREMPDGKSKVTWIEHVMVNEMSQELMLYKDLIYEYNPFGAKLWLYALQRMCEKKYFSSIEYFPKHENDREIRSKEGRKSVMNLSNRMIQSFCKDLNRAKMNHILTHDTNEYNIHLTSEITNPNAIRLKCRSNSNGMVVTATGSVRLHIPPQTIFHFLSDEKRRPEWDSLVGEREVHEVAYISIGEREIQSYNRISILEIYNDDGGDDDDDDEEEDDNNVQIFQEVCIDPMGAYVVYAPIGTKNTHKILNEENSSDFGILPWGFMISRDGHFEDDNNDTSGSDHHKQKGSLVTFSFQVLVPAEAPLGVTMESLNSIFTATIEKIQNALDCEDDD 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01918 614 CDD homeodomain 11 57 IPR001356 GO:0003677
Trre4g01918 614 Gene3D - 107 313 IPR023393 -
Trre4g01918 614 Pfam Homeodomain 12 57 IPR001356 GO:0003677
Trre4g01918 614 Pfam START domain 166 334 IPR002913 GO:0008289
Trre4g01918 614 CDD START_ArGLABRA2_like 104 333 - -
Trre4g01918 614 Gene3D - 1 62 - -
Trre4g01918 614 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 95 608 IPR042160 -
Trre4g01918 614 SUPERFAMILY Homeodomain-like 5 57 IPR009057 -
Trre4g01918 614 SUPERFAMILY Bet v1-like 107 334 - -
Trre4g01918 614 SUPERFAMILY Bet v1-like 356 459 - -
Trre4g01918 614 SMART START_1 120 334 IPR002913 GO:0008289
Trre4g01918 614 SMART HOX_1 4 62 IPR001356 GO:0003677
Trre4g01918 614 Gene3D - 348 460 IPR023393 -
Trre4g01918 614 ProSiteProfiles START domain profile. 100 337 IPR002913 GO:0008289
Trre4g01918 614 ProSiteProfiles 'Homeobox' domain profile. 4 57 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01918 Trre-Chr4 16098255 16102851 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01918 101 610 Homeobox Transcription Factor Family AT1G17920 33.333 1.09e-83 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre4g01918 START 5.6e-26 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01918 K09338 - aprc:113852280 406.757