Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01907 ATGTCCAATTCATATCTCCAATTGTTGCTTCTTTTGATTCTTTACATAATTTCAGCTAATTCAGCTCAACCTTATGAGAGAAACTATGATGAAGCTGAGTTCACTCTACAAGTCCCAACACTAGAGGAAAATGACTTGGATAATCTCTTATCCTTTGGTTACTACCAAAAAAGTTGTCCTCAATTTGAGTCCATTTTGCACAACAAAGTCAAAGAATGGATTAAGAAGGATTACACTTTAGGAGCTAGTCTCTTAAGGTTGCATTTCCATGATTGCTCTGTTAGGGGATGTGATGGCTCCATTCTATTAAAACATGAAGGAAGTGAAAGGGCAGCACAAGCAAGCAAGACATTAAGAGGCTTTGAAGTTATTGATGATATAAAGGCAGAGCTAGAGAAACATTGTCCTATGACAGTGTCTTGTGCAGACATTCTAACAACAGCTGCAAGGGATGCCACAGTTGTAATTGGTGGACCATATTGGACAGTCCCTTATGGTAGGAAAGATGGGACAGTCTCTATTGGCAATGAAGCTGAAATGATTCCTAAGGGTCATGAGAACATTACTTCCTTGATTGAGTATTTTCAATCCAAAGGCTTGACTGTTCTTGACTTGGTTGTTCTCTCAGGGGCACATACTATTGGAAGGACTACTTGTGGCTCAATTCAATACAGGCTATACAACTACAAAGGAACAGGCAAACCAGACCCATCAATTGATCCAAAATACCTAAACTTTTTGCAAAGGAAATGTAGATGGGCCTCAGAATATGTTGATCTTGATGCAACAACACCAAAAACCTTTGACAGAATGTACTATATAAATCTTAAAAGGAACATGGGCTTGTTATCAACAGATCAATTGTTACAATCTGATCCAAGAACTTCTCCATTGGTTTCTGCATTGACTACATCACCATCTGTTTTTGAGCACCAATTTGCTGTTTCAATGTCAAAGTTTGGTGTCATTGATGTTCTTACTGACGAGGATGAAGGAGAAATCAGAACCAATTGCAATTATGTTAATGCTTATTGA 1035 0.3807 MSNSYLQLLLLLILYIISANSAQPYERNYDEAEFTLQVPTLEENDLDNLLSFGYYQKSCPQFESILHNKVKEWIKKDYTLGASLLRLHFHDCSVRGCDGSILLKHEGSERAAQASKTLRGFEVIDDIKAELEKHCPMTVSCADILTTAARDATVVIGGPYWTVPYGRKDGTVSIGNEAEMIPKGHENITSLIEYFQSKGLTVLDLVVLSGAHTIGRTTCGSIQYRLYNYKGTGKPDPSIDPKYLNFLQRKCRWASEYVDLDATTPKTFDRMYYINLKRNMGLLSTDQLLQSDPRTSPLVSALTTSPSVFEHQFAVSMSKFGVIDVLTDEDEGEIRTNCNYVNAY 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01907 344 SUPERFAMILY Heme-dependent peroxidases 50 342 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre4g01907 344 PRINTS Haem peroxidase superfamily signature 157 169 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01907 344 PRINTS Haem peroxidase superfamily signature 81 95 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01907 344 PRINTS Haem peroxidase superfamily signature 261 276 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01907 344 PRINTS Haem peroxidase superfamily signature 139 156 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01907 344 PRINTS Haem peroxidase superfamily signature 204 219 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01907 344 FunFam Peroxidase 182 320 - -
Trre4g01907 344 Gene3D - 53 342 - -
Trre4g01907 344 ProSiteProfiles Plant heme peroxidase family profile. 49 342 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01907 344 Pfam Peroxidase 68 303 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01907 344 Gene3D Peroxidase, domain 2 182 320 - -
Trre4g01907 344 CDD secretory_peroxidase 50 341 IPR033905 GO:0004601|GO:0042744
Trre4g01907 344 FunFam Peroxidase 53 194 - -
Trre4g01907 344 PANTHER PEROXIDASE 25-RELATED 15 329 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01907 344 ProSitePatterns Peroxidases active site signature. 81 92 IPR019794 GO:0004601
Trre4g01907 344 PRINTS Plant peroxidase signature 315 328 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01907 344 PRINTS Plant peroxidase signature 59 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01907 344 PRINTS Plant peroxidase signature 83 103 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01907 344 PRINTS Plant peroxidase signature 119 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01907 344 PRINTS Plant peroxidase signature 157 172 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01907 344 PRINTS Plant peroxidase signature 259 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01907 344 PRINTS Plant peroxidase signature 275 292 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01907 344 PRINTS Plant peroxidase signature 203 215 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01907 344 PRINTS Plant peroxidase signature 138 148 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01907 344 ProSitePatterns Peroxidases proximal heme-ligand signature. 204 214 IPR019793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01907 Trre-Chr4 15949547 15952441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01907 46 343 Peroxidase AT1G30870 60.667 4.71e-133 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01907 K00430 - gmx:100527587 563.533