Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01904 ATGAAAATATTAACACTTTTTCTCTTGTGCTTCTTCTCTTCTATTCTATTAGTCTTTTGCAATGAAAATGAAAAAACCACTTTGAAAGTGCTTTTAGAAGTGAAATCTTCTATTGTGAAAGACCCTGAAAATGTTCTCATTGATTGGTCAGAAAACAATACTGATTATTGTACTTGGAGAGGAATTTCTTGTGACTCGGTACATGGTGTGGTTGGACTCAACCTGTCTTACTCGTCACTCACTGGGTCAATTTCTCCATCAATCGGTCTTTTACAAAACTTACTCCACCTTGATCTTTCATCTAACCATCTTGTGGGTCCCATTCCACCTTCTCTTTCCAACCTCACTAAATTAGAATCTTTGCTGCTCTTTTCCAACCAACTCACAAACCACATTCCAAACGAGTTAGGCTCAATACTGAGTCTCCGAGTTTTACGACTCGGTGACAATGAACTCAGTGGCGAAATTCCATCTTCTTTAGGCAATTTGATCAACCTTGTTAGCCTTGGTTTAGCTTCATGTAAACTCACCGGTTCGATTCCACCTCAACTCGGTCAACTCACTGAGTTACAAAATTTGATCCTGCAAGACAATGAGTTAACAGGTCCGATTCCATCCGAGTTAGGAAACTGTTCAAGCCTCATAATCTTCTCTGCAGCTGACAACAAACTCAATGGAACAATCCCAACTCAACTGAGTCAACTCAAAAACCTCCAAGTTCTCAACTTTGCCAATAACACCTTAACAGGGAAAATTCCGAGTCAACTCGGTCAAATGAAAGAGCTTAATTATCTCAATTTAATGGAAAACAAACTTGAGGGTCACATTCCACCATCTTTATCTCAATTGGGTAACCTTCAAAATCTTGACTTGTCCATGAACAAATTCAATGGAGGAATTCCAAAAGAGTTCACAAACATGCATCAGTTGAAATATTTAGTTCTTTCTGGAAACCCTTTAAATGGAATATTTCCACCAACTTTATGTTACAATGCAACAAATTTGGAGCATTTAATGATATCTATGAGTGGACTTTTTGGTAAAATTCCATCTGAATTGAATCAATGTAAATCATTGAAGCAAATAGATTTATCAAACAATTCTCTCAATGGTACAATACCTATTGAGATTTATAGTTTGGTAAATTTAACTGATCTTATGCTTCATAACAATAGTTTAATTGGTTCAATTTCATCTAACATAGGGAATTTAACCAACATGCAAACACTTGCATTGTATCATAATAAGTTTCAAGGTGTTTTGCCTAAAGAAATTGGAAGGCTTGGAAAGTTGGAAATTTTGTATCTTTATGATAATCAATTTTCTGGTGAGATACCTTGGGAAATTGGTAATTGTTCAAGATTACAAATGGTTGATTTTTTTGGTAACCATTTTGGTGGAAGAATTCCAATTAGTATTGGAAAGTTGAAAGATTTGAATTTTCTTCATCTTAGGCAAAATGAGTTTGTTGGTGAAATTCCAGCTACACTTGGGAACTGTCATAAGCTGAATGTTCTTGATTTAGCAGATAATAAGCTCTCTGGTGGAATTCCTGCAACATTTGGTTACCTTAAAGATTTGAAGTTGTTTATGCTTTACAATAATTCTCTTGAAGGTGGTATTCCTAGACAAATGGCGAATGTAGCAAATTTGACAAGAGTTAATCTTTCGAATAATCGGTTGAATGGAAGTTTGGTTCCATTGTGTAGCTCTAGAGAGTTTCTTTCTTTTGATGTTACAGGTAATGAATTTGATGGTGAAATTCCTTCAAATTTGGGAAATTCTTTGTTTCTTGATAGGTTAAGATTAGGAGATAACAAGTTTTCCGGTGAAATTCCGAGGACATTGGGGAAAATCACTGATTTGTCATTGTTAGATCTTTCAGGAAATTCACTCATTGGACCAATACCAGGTGAACTATCTTTGTGTAGCAAATTAGCTTCTGTTGATTTAAGCAATAATCTTCTTTTTGGTCATATACCATCATGGCTTGGAAATTTGCCTAAGTTAGGAAAACTTAATCTTGCTTTTAATCAATTTTCTGGTCCTTTTCCACTGAGATTATTCAAGTTACCTATGTTGTTGATTCTTTCCTTGAATAACAATTCTCTTAATGGTAGTCTACCAAATGGTATCGGCGATCTTGAATCGCTTAATGTACTAAGACTTGACCATAATAATTTTAGTGGACCAATCCCTCATGAAATAGGTAAGTTGAGAAATCTTTATGAGCTTAATCTCTCTAGAAATGTCTTTAGTGGTGACATACCGAATGAGATCGGAAATCTTCAAAATCTTCAAGTCGTTTTAGACCTCAGTTACAATAATCTCTCTGGTCAGGTTCCATCTTCTATCGGCACATTGGCGAAATTGGAAGCACTTGATCTGTCTCACAATCAACTCGCTGGTGTAGTTCCTCCAAACATCGGCGAAATGATTAGCTTGGAAAAGCTTAATGTGTCTTATAATAGCTTTCAAGGTGCATTGGATAAGAAGTTCTCTCGCTGGCCATACGACGCGTTTGTAGGAAACATTCATCTTTGTGGAGCATCTCTCGGTAGCTGCAACCATGGCGGAGCTTCTCGAATTAAGCTATCACGGTTAAGTGAGACATCAGTTATCATAATCTCTGCCATTTCAACTCTAGCTGCAATTGCACTACTTATTCTTGCAGTAAAAATCTTCTTGAGAAATAGGCAAGATTTTTTGAAGAAAGACAGTGAATTAGCCTGCATTTTCTCCTCCTCTTCGTCAAAAGCGCAGAAACGGCCATTGTTCCCTACAGGTGGACGGCGAGAATTTAGATGGGAAGATATCATGGAAGCTACAAACAATTTGAGTGATGAATACATAATCGGTTCCGGAGGTTCCGGAACAGTCTACAGAGTTGAATTTCCTACCGGCGAAACCGTAGCTGCCAAGAGAATTTCATTGAAAGATGAATATCTCTTACATAAAAGCTTTCTAAGAGAAGTGAAGACATTAGGGAGAATTAAGCATAGACATTTGGTGAAACTTATTGGTTGTTGTACCAATAGAAACAAAGGAAATGGTTGTAACCTATTGATATATGAGTATATGGAAAATGGAAGTGTGTGGGATTGGTTACATGGAAATGCTCTAAAGTTAAAGAGAAACCTTGATTGGGAAACAAGGTTCAAAATTGCTTTAGGGTTAGCTCAAGGAATGGAGTACCTTCATCATGATTGTGTGCCAAAGATCATTCATAGGGACATCAAATCTAGCAACATATTGTTAGATTCTAATATGGATGCACATTTGGGAGATTTTGGATTGGCAAAAGCTATCATTGAGAGTCATGATTCTAATACTGAGTCTACTTCTTGTTTTGCAGGATCTTATGGTTACATTGCTCCAGAGTTTGGATACACTCTAAAGTCAACAGAAAAGAGTGATGTTTACAGCATGGGAATTGTGTTTATGGAACTTGTTAGTGGTAAATTACCAACTGATGCATTATTTAGAGGAGGTATAGACATGGTGAAATGGGTGGAGATGCATATTGACAAGAAAGGAATTGAAAATGAAGAACTTATAGATTTTGAGCTCAAACCACTTTTACCTTGTGAAGAATTTGCTGCATTTCAAGTTCTTGAGATAGCTTTACAATGCACAAAAACTGCACCACAAGAGAGACCATCATCAAGGCAAGTATGTGATCTTCTTCTACATGTTTCCAAGAATAAAAAAGTGGAGTTTAAGAAGATGAATTTGGATTCCTACAACTGA 3750 0.364 MKILTLFLLCFFSSILLVFCNENEKTTLKVLLEVKSSIVKDPENVLIDWSENNTDYCTWRGISCDSVHGVVGLNLSYSSLTGSISPSIGLLQNLLHLDLSSNHLVGPIPPSLSNLTKLESLLLFSNQLTNHIPNELGSILSLRVLRLGDNELSGEIPSSLGNLINLVSLGLASCKLTGSIPPQLGQLTELQNLILQDNELTGPIPSELGNCSSLIIFSAADNKLNGTIPTQLSQLKNLQVLNFANNTLTGKIPSQLGQMKELNYLNLMENKLEGHIPPSLSQLGNLQNLDLSMNKFNGGIPKEFTNMHQLKYLVLSGNPLNGIFPPTLCYNATNLEHLMISMSGLFGKIPSELNQCKSLKQIDLSNNSLNGTIPIEIYSLVNLTDLMLHNNSLIGSISSNIGNLTNMQTLALYHNKFQGVLPKEIGRLGKLEILYLYDNQFSGEIPWEIGNCSRLQMVDFFGNHFGGRIPISIGKLKDLNFLHLRQNEFVGEIPATLGNCHKLNVLDLADNKLSGGIPATFGYLKDLKLFMLYNNSLEGGIPRQMANVANLTRVNLSNNRLNGSLVPLCSSREFLSFDVTGNEFDGEIPSNLGNSLFLDRLRLGDNKFSGEIPRTLGKITDLSLLDLSGNSLIGPIPGELSLCSKLASVDLSNNLLFGHIPSWLGNLPKLGKLNLAFNQFSGPFPLRLFKLPMLLILSLNNNSLNGSLPNGIGDLESLNVLRLDHNNFSGPIPHEIGKLRNLYELNLSRNVFSGDIPNEIGNLQNLQVVLDLSYNNLSGQVPSSIGTLAKLEALDLSHNQLAGVVPPNIGEMISLEKLNVSYNSFQGALDKKFSRWPYDAFVGNIHLCGASLGSCNHGGASRIKLSRLSETSVIIISAISTLAAIALLILAVKIFLRNRQDFLKKDSELACIFSSSSSKAQKRPLFPTGGRREFRWEDIMEATNNLSDEYIIGSGGSGTVYRVEFPTGETVAAKRISLKDEYLLHKSFLREVKTLGRIKHRHLVKLIGCCTNRNKGNGCNLLIYEYMENGSVWDWLHGNALKLKRNLDWETRFKIALGLAQGMEYLHHDCVPKIIHRDIKSSNILLDSNMDAHLGDFGLAKAIIESHDSNTESTSCFAGSYGYIAPEFGYTLKSTEKSDVYSMGIVFMELVSGKLPTDALFRGGIDMVKWVEMHIDKKGIENEELIDFELKPLLPCEEFAAFQVLEIALQCTKTAPQERPSSRQVCDLLLHVSKNKKVEFKKMNLDSYN 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01904 1249 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1074 1086 IPR008271 GO:0004672|GO:0006468
Trre4g01904 1249 SMART LRR_typ_2 788 812 IPR003591 -
Trre4g01904 1249 SMART LRR_typ_2 139 163 IPR003591 -
Trre4g01904 1249 SMART LRR_typ_2 91 114 IPR003591 -
Trre4g01904 1249 SMART LRR_typ_2 235 259 IPR003591 -
Trre4g01904 1249 SMART LRR_typ_2 428 452 IPR003591 -
Trre4g01904 1249 SMART LRR_typ_2 187 211 IPR003591 -
Trre4g01904 1249 SMART LRR_typ_2 283 306 IPR003591 -
Trre4g01904 1249 SMART LRR_typ_2 476 500 IPR003591 -
Trre4g01904 1249 SMART LRR_typ_2 307 331 IPR003591 -
Trre4g01904 1249 SMART LRR_typ_2 115 138 IPR003591 -
Trre4g01904 1249 SMART LRR_typ_2 380 404 IPR003591 -
Trre4g01904 1249 SMART LRR_typ_2 691 715 IPR003591 -
Trre4g01904 1249 SMART LRR_typ_2 548 573 IPR003591 -
Trre4g01904 1249 SMART LRR_typ_2 739 763 IPR003591 -
Trre4g01904 1249 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Trre4g01904 1249 SUPERFAMILY L domain-like 325 567 - -
Trre4g01904 1249 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 182 - -
Trre4g01904 1249 PRINTS Leucine-rich repeat signature 788 801 - -
Trre4g01904 1249 PRINTS Leucine-rich repeat signature 359 372 - -
Trre4g01904 1249 Gene3D Ribonuclease Inhibitor 371 468 IPR032675 -
Trre4g01904 1249 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 470 566 - -
Trre4g01904 1249 Pfam Protein kinase domain 949 1226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g01904 1249 ProSitePatterns Protein kinases ATP-binding region signature. 952 974 IPR017441 GO:0005524
Trre4g01904 1249 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 567 858 - -
Trre4g01904 1249 SUPERFAMILY L domain-like 28 323 - -
Trre4g01904 1249 SUPERFAMILY L domain-like 570 837 - -
Trre4g01904 1249 Gene3D Phosphorylase Kinase; domain 1 910 1026 - -
Trre4g01904 1249 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 909 1026 - -
Trre4g01904 1249 Gene3D Ribonuclease Inhibitor 270 370 IPR032675 -
Trre4g01904 1249 Gene3D Ribonuclease Inhibitor 165 269 IPR032675 -
Trre4g01904 1249 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 622 1230 - -
Trre4g01904 1249 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 183 276 - -
Trre4g01904 1249 SMART serkin_6 946 1234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g01904 1249 Gene3D Ribonuclease Inhibitor 26 141 IPR032675 -
Trre4g01904 1249 ProSiteProfiles Protein kinase domain profile. 946 1234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g01904 1249 SUPERFAMILY Protein kinase-like (PK-like) 924 1229 IPR011009 -
Trre4g01904 1249 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 277 375 - -
Trre4g01904 1249 Gene3D Transferase(Phosphotransferase) domain 1 1027 1248 - -
Trre4g01904 1249 Gene3D Ribonuclease Inhibitor 568 858 IPR032675 -
Trre4g01904 1249 FunFam Leucine-rich repeat receptor-like protein kinase 1027 1246 - -
Trre4g01904 1249 FunFam Uncharacterized protein 376 469 - -
Trre4g01904 1249 Gene3D Ribonuclease Inhibitor 469 567 IPR032675 -
Trre4g01904 1249 Pfam Leucine Rich Repeat 93 115 IPR001611 GO:0005515
Trre4g01904 1249 Pfam Leucine rich repeat 740 801 IPR001611 GO:0005515
Trre4g01904 1249 Pfam Leucine rich repeat 502 561 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01904 Trre-Chr4 15905985 15910231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01904 134 710 Receptor kinase-like Gene Family AT5G56040 35.265 1.08e-86 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre4g01904 Pkinase 3.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01904 - - gmx:100801889 1711.43