LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre4g01903	ATGGCAACTTCTGGAGTTGAAATTGCTTCTTCTGCACCGTTTGATTGTGTTTTAAGGGACCGTAATCATCGTGATGTATGCAGAGAAAGTAGCAAAGTTAAAGCTACACATGTTGCTTTTCAAAGAAACATTAAGAATTTTGTCATGGATCATCTTAACACGTGCATTTCCATGTCTGATTCTTCAACAACAAATGAAAACAACATCAACAACAACAACAATGATAGTCAAATGAATAACAACAAACTTGCGAGGATTCGTTTGACAAGAAACAATCATAACAACAATGATAAGGGTGATAAAGATGAATTAGCCTTGGCTTCAATGATTAGCCCGAAACATTCGCGGCTTCTTGATCGATGGGCTGCGAGACAAGCTCGTGAGATGGTGTCAACATTGGAGAATGAAGCTGAGTTGTTGTCGATTGAAGAAAACACACACAAAAGCAACAACATTCCTATATCTTCGGAGACATCTAGTTCTATCTCGGATGAATGCTCATCGGAGATATCGAACCTTGGTGCATCTTCCCTTGTTCAGATATGGGAAAAGAGGCTTAACAAATCGAGTGGATCGAAACCGAGTACTCCAATGGAGAAAACAAGTCCGAACGATGGTACTAGTGCTGCTACTTGCAACAATGAGAATGAGTTTGTTGTGGAAGAACAAAGAGGGCCGGAATTAGGATTGTGTTTTGAAGGACAGTTATCAGGGAACGAAGAATCGTTTTCGATTTCATCGTTCCCTGATTGGGAATCTGATAAGACAGGTGATCAAAGTAGGTCTTGTTCAAGAGATCAAAGTAGGTGGTGTTCGTCGGAGAGTGATAGAGTTAGTGTTGCTGAAATCATAAAGAAACTCACTGCAACGAGTCAAACGCAGAGCCCACCTCCGTATTTTGCCGATGAAAATGACCATGAAGTGAGTGGTAGTAGCACTAGGGAATGCTCTCCTTGTAGAGATTTTGTGCCTGAACTTCCAGATCAGAGAGTTTTTCCTCAGGTAACTTGTTTACCAAGAATTAGGGGGCGCCAAGCGTTCAATGATTTGCTTATGCAGTTGGAGAATGATAGGCATGGTGAGCTTAAGAACCTGGCTGAGCGTGGAACGGTCTCCAAGTTCGCACAAAGAGGTCGCATTCAGGCATTGCTTCGACTTAAATTATTACAACGTGGCGTGGCAGCTAATAATCTATTACAGAAATCAACATCATCTGAAGTAAACAGACAAGTACAACCACAGGGATCTGCAATTATGCAACTAAGGGAAAAATTTAGCACTGCGGTTGAACAAAAAAGTACAGTCCAGACAGAAGTAGCTAACGCACAAAATACTCGCAAGGAGATTGTGAACAACATCACACAATTGGAAAACTCTTCCATTGCTGCTCAAATCAGCAAAGACACAAGCAGCCAGGTTCCTCATGGTACTGCCAGTCACTCCTTCAAATCGACACAAAAGTCGGTGTCTCAAACTAGAGACGAAGATGGTCCGAGTTCAAATGCCGTGTCTCAAGAAACATGTTTTAAAGCTCAGCATGATTACTTCAAGGAAACTGCAGAACCAACTACATCAATGAATGATTCAAATGCTAATGAGAAAGCTGAAGAGGAAAATAACCAGCAATATGATGAAACCAGTTATGGTTGTGCATTGGAAGAGGAAGGAAGTAACCAGAACTATGGTGAAAGCAGTTATGAAGAAGAAGTGGAAGAGATTTATGATGAAAATAATCATGACTGGATCAGTGAAATTTCTCGACCGAAGAGCTTTTGGGAAGAGAAAAGACAAGCATGGTATAAAGAAATGCTTGACAATGGTTCTCCAAATGAGGATATTCAAGTGCTTCTTCAAAGAAGAACAGTGTCAACTTTCCTTTCTAGTGACTTCCGCGAAAAAATGGATAGATTGATGCAATCTCATAAAGGAACACAAACTCATTTAGTGAGTAATTGCGATGATGATGAAGACAATGAAGGGCTGATGGCATTTTTCCTAGAACGCCTGCATTCTGCAAGAACTCCTCAAGAAAATGGAATAGAGAGAACGGTAGACGAAGAAAAGGAAAGTATAAATGAGGAAGAAGAAAACGAAGAAGAAGACGAGGAAGAGGAGGATGAGGATGATGATGACGACGACGAGAAAGAGCATGAAGAGGAGCTGGGAGGGGAGAGCTTGGTAAGTAGTTTGTATCATGAAGTTGGAGACTATTCTAATCGATCCTCATCATGGAATTATAGAGACAACGAAACTGGTGATGATTTTGATAGAGTTGCTTCTACATCTTCACGACCTTATCAATCTCCGTCTTTCTATCATGATAGTCGGAGAACCTCCCCATCTACCAATCAACACTCAATTGAAATGGATCTCATATATGATATGAGAGGATATATGGAGCAACTTCATCAAGAGATGACTGAACTAAGGAAATCAATAAAGAGTTGCTTGGATATGCAGATGCAGATGCAGTTACAACAATCCAATAACCAAAGGATGCAAACAGTTGAAAAAGAAGAAAAGAAGTCACATAACAAGGCTGGTAAGAAAGGAAACTGCTGCATTTGCTATAAGATGAAAGTTGACTCAGTCCTATACAGGTGTGGACACATGTGTGCATGTCTGAAATGTGCCAATGAGTTACAATGGAACAGTGGAAAATGTCCAATATGTCAAGCTAAAATAGACGATGTTGTTCGAGTTTATGTTGATGCTTAG	2718	0.4043	MATSGVEIASSAPFDCVLRDRNHRDVCRESSKVKATHVAFQRNIKNFVMDHLNTCISMSDSSTTNENNINNNNNDSQMNNNKLARIRLTRNNHNNNDKGDKDELALASMISPKHSRLLDRWAARQAREMVSTLENEAELLSIEENTHKSNNIPISSETSSSISDECSSEISNLGASSLVQIWEKRLNKSSGSKPSTPMEKTSPNDGTSAATCNNENEFVVEEQRGPELGLCFEGQLSGNEESFSISSFPDWESDKTGDQSRSCSRDQSRWCSSESDRVSVAEIIKKLTATSQTQSPPPYFADENDHEVSGSSTRECSPCRDFVPELPDQRVFPQVTCLPRIRGRQAFNDLLMQLENDRHGELKNLAERGTVSKFAQRGRIQALLRLKLLQRGVAANNLLQKSTSSEVNRQVQPQGSAIMQLREKFSTAVEQKSTVQTEVANAQNTRKEIVNNITQLENSSIAAQISKDTSSQVPHGTASHSFKSTQKSVSQTRDEDGPSSNAVSQETCFKAQHDYFKETAEPTTSMNDSNANEKAEEENNQQYDETSYGCALEEEGSNQNYGESSYEEEVEEIYDENNHDWISEISRPKSFWEEKRQAWYKEMLDNGSPNEDIQVLLQRRTVSTFLSSDFREKMDRLMQSHKGTQTHLVSNCDDDEDNEGLMAFFLERLHSARTPQENGIERTVDEEKESINEEEENEEEDEEEEDEDDDDDDEKEHEEELGGESLVSSLYHEVGDYSNRSSSWNYRDNETGDDFDRVASTSSRPYQSPSFYHDSRRTSPSTNQHSIEMDLIYDMRGYMEQLHQEMTELRKSIKSCLDMQMQMQLQQSNNQRMQTVEKEEKKSHNKAGKKGNCCICYKMKVDSVLYRCGHMCACLKCANELQWNSGKCPICQAKIDDVVRVYVDA	905

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre4g01903	905	Coils	Coil	439	459	-	-
	Trre4g01903	905	MobiDBLite	consensus disorder prediction	242	268	-	-
	Trre4g01903	905	MobiDBLite	consensus disorder prediction	187	211	-	-
	Trre4g01903	905	PANTHER	BNAC05G24000D PROTEIN	1	904	-	-
	Trre4g01903	905	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	825	904	IPR013083	-
	Trre4g01903	905	MobiDBLite	consensus disorder prediction	465	504	-	-
	Trre4g01903	905	Pfam	Zinc finger, C3HC4 type (RING finger)	850	898	-	-
	Trre4g01903	905	ProSiteProfiles	Zinc finger RING-type profile.	853	892	IPR001841	-
	Trre4g01903	905	MobiDBLite	consensus disorder prediction	672	783	-	-
	Trre4g01903	905	MobiDBLite	consensus disorder prediction	520	544	-	-
	Trre4g01903	905	Coils	Coil	677	711	-	-
	Trre4g01903	905	Coils	Coil	799	819	-	-
	Trre4g01903	905	Coils	Coil	123	143	-	-
	Trre4g01903	905	CDD	mRING-HC-C3HC5_NEU1	850	902	-	-
	Trre4g01903	905	MobiDBLite	consensus disorder prediction	288	312	-	-
	Trre4g01903	905	MobiDBLite	consensus disorder prediction	732	746	-	-
	Trre4g01903	905	MobiDBLite	consensus disorder prediction	688	719	-	-
	Trre4g01903	905	SUPERFAMILY	RING/U-box	852	897	-	-
	Trre4g01903	905	MobiDBLite	consensus disorder prediction	758	783	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre4g01903	Trre-Chr4	15898758	15902920	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre4g01903	845	901	C3H Transcription Factor Family	AT3G06140	35.088	4.48e-07	51.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre4g01903	-		-	mtr:25488200	1155.58