Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01872 ATGGAGTCATCGGTTGATTTGTTACCACCAGCTAAACGCACAGCTCCAACTGGAATTTCATCTGAGGAAGAATGCAAAAAACTTAAATTATCAAGTGATACCTTGCCGCATTCAGCACATGGAAATGTTGTAGATTACAAAAATCCGTATGTAATCTCAGATGTTATACATCGTTTAGAGAGTGGAAAATTTGGAAGCGTAACAAAGGATATTGAAGCTCTTATAACCCAAAGAATGCAAACTTTGGGCCCTTACTTTGCAAAATATCCTATACTTATCAATAAATTATTGAAAGTGGTGAAGAATCATGATGAAGAAAACCACAACCCAGAGAATAAAAAAGTTACTGGTATGTCGCATCAAAATGTCATAGATTTGGATTTGGATGAGGGGGTCATTGAAAGGCATGTTTTGGCACCAAAAAGAGAAAAGAATGTTCCTGCAGCACCATTTCCTGTTGTTATCATTGATTCAGATGAGGAAGATGATAGGGATCAAAATTTGTTTCTTCCATTTCATGAAGTTATATTGCCGAAACCAGTTCAGTCTCCTGCAATAAGAACAATTGGCTATCATGCTCCCAATACTTACCATGGAGGAAGTGCAGATCTAGCATTTGAAACAAGTCTGACTCCTAATGATAACATTAAGAACGATAACGGTGATCATGTTGGTGTACACAAGGAAGAAGATAATAAGGGCTATCATCCTCTCAATGCTTACCATGGAGGAAGTGAAGATCTAAAATTTGAAACAAGTCTGCCTCCTAAAGATAACACAAAGAAAGATAAAGGTGTTTATGTTCGTGTGCACATGGAAGAAGATAATCAGGGCTATCATGCTCCCAATGCTTACCATGGAGAAAGTGCAGATAAATTTTTTGAAACAAGTCTGCCTCCAAAAGATCACACAGAGAAAGATAAAGGTGTTTATGTTGGTGTACAAGAGGAAGAAGATATTGAGGTTGATGCTGAAGATGACGGGCTAGAAGATATTTGGAGGGAGATGTCTGTGGCGATAGAAACTTCTAAAGATGTTTCTGCCGATCAGCCACCCGAAGAAGAGGAAAAAGATGCTGACTGTGATCATTCTTTTGTTTTGAAAGACGACCTTGGTTATGTTTGTCGCGTTTGTGGGGTTATTGACAGAGGAATTGAAACCATATTTGAGTTCCAATACAAGGTTAAAAGGAGCACAAGAACTTATATGTCTGAACCGGGGAATGCCAAAGAAAAAGATGATAGATTTGGAGTTAAGATTGCTCAAGATGATATTGTGGTAACTGAATTATCAGCACATCCTCGGCATGCAAATCAAATGAAACCGCACCAAGTTGAAGGATTCAATTTTCTTGTCAGAAACCTGGCGGGGGACCATCCTGGGGGATGCATTCTGGCTCACGCCCCAGGATCTGGAAAGACATTCATGATTATCAGTTTTGTGCAGAGTTTTCTAGGAAAGTATCCCAATGCAAGACCTATGGTGGTGCTTCCTAAGGGAATACTGTCGACTTGGAAAAAAGAGTTTCAAACTTGGCAAGTGGAAGATGTACCACTTTATGACTTATACACTGTGAAGGCTGACAGTAGATCACAACAATTGGAAGTCTTAAAGCAGTGGGTGGAAAACAAGAGCATCCTTTTTTTAGGATACCAACAGTTTTCTTCCATTATCTGTGATGACAGTAATAGCAATGCAACGCTATCTTGCCAAGATATATTGCTTAAGGTTCCCTCACTTCTCATTTTAGATGAGGGACACACTCCCAGGAACGAGAGTACTGATATTGTACAGTCCCTTGCAAAAGTACAAACACCAAGAAAAGTTGTACTGTCTGGAACCCTATATCAGAATCATGTCAAGGAGGTATTTAATGTGCTTAACCTTGTTCGCCCAAAGTTTTTAAAGATGGAAACATCTAAGCATATTGCCCGGCGCATTCAGAGTAGGATCCATTTATCTGGTGTGAATAACTTCTATGAATTGGTTGAAAAGACTTTGCAAAAGGACCCAGATTTTAAAAGGAAAGTGGCTGTTATACATGATTTGCGGGAGATGACAAGTAAGGTATTGCACTACTATAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTAGTAGATTTTACTGTGGTGCTCAAACTCACACCTAGACAGAAACTTGATATTGAGAAAGTAAAGGGGAAAAAATATAGTAAGTTTAAGATGTCTGCTGTAGGTAGTGCAGCATATCTGCACCCAAAATTGACACCAGTTGCAGAGAAATATGATGAAAAATCTAAATCTAAATATGATGATATAATGGATGATCTAATAGCGAACCATAATGTGAGAGATGGAGTTAAATCAAAATTCTTTTGCAATTTGCTGAACCTATGCGAATCAGCTGGGGAGAAGCTTTTGGTGTTCAGTCAATACCTCTTGCCTCTGAAATATTTAGAAAAGTTAGCAATGAAATGGAAGGGATGGAGTCTTGACAAAGAAATTTTTGTAATTTCGGGTGATTCAACCACTGAACAAAGGGAGTGCTCCATGGAAACATTTAACAATTCACCTGATGCCAAAATATTTTTTGGGTCCATCAAAGCATGTGGCGAGGGTATATCATTGGTTGGGGCCTCCCGGATCATCATCTTAGATGTCCATTTGAACCCATCTGTTACTCGTCAAGCTATTGGTCGTGCTTTCCGGCCAGGCCAGAAAAAGAAAGTGTATGTTTATCGATTGATAGCTGCTGATTCCCTAGAAGAGCAAGATCACAGTACTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAATATTGTGGTGACAGAGCATTTGAAGTGGAAACACTTGACGTGAAGAAATGCGGTGATCTGTTTCTAGAAAGTCCATTGTTAGGCGAAGATGTAAAAGCTCTGTATAAAAGGTAA 2925 0.3891 MESSVDLLPPAKRTAPTGISSEEECKKLKLSSDTLPHSAHGNVVDYKNPYVISDVIHRLESGKFGSVTKDIEALITQRMQTLGPYFAKYPILINKLLKVVKNHDEENHNPENKKVTGMSHQNVIDLDLDEGVIERHVLAPKREKNVPAAPFPVVIIDSDEEDDRDQNLFLPFHEVILPKPVQSPAIRTIGYHAPNTYHGGSADLAFETSLTPNDNIKNDNGDHVGVHKEEDNKGYHPLNAYHGGSEDLKFETSLPPKDNTKKDKGVYVRVHMEEDNQGYHAPNAYHGESADKFFETSLPPKDHTEKDKGVYVGVQEEEDIEVDAEDDGLEDIWREMSVAIETSKDVSADQPPEEEEKDADCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMSEPGNAKEKDDRFGVKIAQDDIVVTELSAHPRHANQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFVQSFLGKYPNARPMVVLPKGILSTWKKEFQTWQVEDVPLYDLYTVKADSRSQQLEVLKQWVENKSILFLGYQQFSSIICDDSNSNATLSCQDILLKVPSLLILDEGHTPRNESTDIVQSLAKVQTPRKVVLSGTLYQNHVKEVFNVLNLVRPKFLKMETSKHIARRIQSRIHLSGVNNFYELVEKTLQKDPDFKRKVAVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLKLTPRQKLDIEKVKGKKYSKFKMSAVGSAAYLHPKLTPVAEKYDEKSKSKYDDIMDDLIANHNVRDGVKSKFFCNLLNLCESAGEKLLVFSQYLLPLKYLEKLAMKWKGWSLDKEIFVISGDSTTEQRECSMETFNNSPDAKIFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKKVYVYRLIAADSLEEQDHSTCFKKELISKMWFEWNEYCGDRAFEVETLDVKKCGDLFLESPLLGEDVKALYKR 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01872 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 661 IPR027417 -
Trre4g01872 974 CDD SF2_C_SNF 781 909 - -
Trre4g01872 974 MobiDBLite consensus disorder prediction 1 20 - -
Trre4g01872 974 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 454 633 IPR014001 -
Trre4g01872 974 Pfam SNF2-related domain 460 670 IPR000330 GO:0005524|GO:0140658
Trre4g01872 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 579 936 IPR027417 -
Trre4g01872 974 SMART helicmild6 813 898 IPR001650 -
Trre4g01872 974 Gene3D - 408 670 IPR038718 -
Trre4g01872 974 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 31 973 IPR044567 GO:0080188
Trre4g01872 974 SMART ultradead3 436 643 IPR014001 -
Trre4g01872 974 Gene3D - 703 960 IPR027417 -
Trre4g01872 974 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 787 952 IPR001650 -
Trre4g01872 974 Pfam Helicase conserved C-terminal domain 783 897 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01872 Trre-Chr4 15485159 15493521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01872 795 926 RAD5 or RAD16-like Gene Family AT5G43530 34.848 8.82e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre4g01872 SNF2_N 3.5e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01872 K10875 - gmx:100795356 1192.18