Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01865 ATGGAATTTGTACCTATGCAAGTTTATGGAATTGACCACATTGGAGATCTGAAGGCCGAAGGCTTTGTATCGGTGACAGGAGTTGTAACAAGGACAAGTGAAGTTCGACCCGAGCTTCTAAAAGGAACTTTCAAATGCATGGAATGTGGTGGGATTATAAAGAATGTTGAACAACAATTCAACCAACAATATGTCTATGTGCAACCTGTAACAATCGAACGAACAAAGTGGGCACTATTGGGCGAAGAGAGCAAATTTACTTATTGGCAAAAGGTCAGAAGAATGCAGGAGACATCCAAAGAGATACCTGCAGGCTGTTTGCTTAGGTCATTGGATGTTATTCTTCGTCATGAGATTGTCGAACATGCCAGGGCTGGGAAGCTTCGCAATGCAAGGGTTCCACATCTGGAAACGAAGGTGACGGGCCTTAAGGCTTTAGGAGTCAGAGATGTCTCCTATCATCTAACTTTTATTGCAAATTCTGTGCAGATTTGTGATGGTAGAAAAGAAACAGACATCAGGAACAGAAAGAAGGATTCAGATGAAGATGATCAGCAATTTACTGCACGGGAGCTGGATGAAGTTCAACGAATGAGGAACACTCAAGATTTTTGTCAAACTTGGGACATAAATGTCTGTATTGTTGGAGATCCAAGTTGTGCAAAGTCTCAATTTCTTAAATATACTTCAAGCATTGTTCCAAGATCTGTGTATACATCTGGCAAATCATCATCTGCTGCTGGCTTGACTGCAATTGTTGCTAAGGAACCAGAAACTGGGGAGTTTTGTATTGAGGCAGGCACTTTGATGCTTGCTGACAATGCCATTTGCTGCAATGATGAATTTGACAAGATGAACATCAGATATCAAGTTGCAATTCACAAGGCCATGGAACAGAACACTATTAGTATCACAAAAGCAGGAATACAAGCAACACTTAATGGCCATATTTCCATTCTCGCCGCTGCCAATCCGGCTGGGGGGAGGTACAATAAGTGTAAACCACTGAAGGTAATATGTTTTGAATGTGGCTCTTCCACCAGCTATACTTCAAGGTTTGATCTTGTATACATTATGGTCGATGACCCTGATGAAACAATAGATGCCAACATAGCTCAACAGATCGTGAAACTTCATCAAAAGCGTGATGATGCTCTTGATACCGCATTCTCCACAAAAGAAGTAAAGCGTTATGTTGCCTATGCAAAAACTCTTAAACCAAAGGTACAACCTCATCATGTTGATGAAGCCGAAAAAATGCTTAAAATCCATAATAAGGCAGGACATATTCTCTGA 1296 0.4097 MEFVPMQVYGIDHIGDLKAEGFVSVTGVVTRTSEVRPELLKGTFKCMECGGIIKNVEQQFNQQYVYVQPVTIERTKWALLGEESKFTYWQKVRRMQETSKEIPAGCLLRSLDVILRHEIVEHARAGKLRNARVPHLETKVTGLKALGVRDVSYHLTFIANSVQICDGRKETDIRNRKKDSDEDDQQFTARELDEVQRMRNTQDFCQTWDINVCIVGDPSCAKSQFLKYTSSIVPRSVYTSGKSSSAAGLTAIVAKEPETGEFCIEAGTLMLADNAICCNDEFDKMNIRYQVAIHKAMEQNTISITKAGIQATLNGHISILAAANPAGGRYNKCKPLKVICFECGSSTSYTSRFDLVYIMVDDPDETIDANIAQQIVKLHQKRDDALDTAFSTKEVKRYVAYAKTLKPKVQPHHVDEAEKMLKIHNKAGHIL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01865 431 Pfam MCM OB domain 20 127 IPR033762 -
Trre4g01865 431 Gene3D - 192 428 IPR027417 -
Trre4g01865 431 PRINTS Mini-chromosome maintenance (MCM) protein family signature 295 308 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre4g01865 431 PRINTS Mini-chromosome maintenance (MCM) protein family signature 319 331 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre4g01865 431 PRINTS Mini-chromosome maintenance (MCM) protein family signature 207 222 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre4g01865 431 PRINTS Mini-chromosome maintenance (MCM) protein family signature 267 281 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre4g01865 431 Gene3D - 38 87 - -
Trre4g01865 431 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 20 204 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trre4g01865 431 Gene3D - 20 127 IPR012340 -
Trre4g01865 431 ProSiteProfiles MCM family domain profile. 209 375 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre4g01865 431 Pfam MCM P-loop domain 207 379 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre4g01865 431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 420 IPR027417 -
Trre4g01865 431 SUPERFAMILY Nucleic acid-binding proteins 8 126 IPR012340 -
Trre4g01865 431 SMART mcm 10 426 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01865 Trre-Chr4 15423550 15426715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01865 22 421 Core DNA Replication Machinery Family AT5G44635 59.873 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01865 K02542 - cpap:110817343 511.916