Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01846 ATGGAACCTATTGATGAAAATGAAGAGTTTGTTGCAAATGAGATTACCAATAATGAATCATATGCGGGTGGTATAGAGGTTAATAACGATGAAGAACCTTACCTTGGAATGGAATTTGAGTCACAGCAAGATGCTTATTCTTTCTATGCCTGTTATGCTAAAAGAGTCGGTTTCGGTGTATGCACCAAAAGTAGTCGTCGTTCAAAACTTTCTAAACAATTCATCGATGTAAAATATGCTTGCACGAGATATGGGAAAAAGCGAGAATCGACTGCACAAAATCCACGTCCTTGTTTGAAGGTGGAATGTGAGGCTGACTTACATATTAAAAGAAACTATGAAGGGAAATGGGTAATCCACGGCTTCATCAAAGATCATAATCATGATCTTTTCCCAACATATGCACATTATTTTCCTAGCCATAGAAAAATAAATGAATCTCAGAAGCAATGTATTGAAACTTTGCAACACGTTGGTGTGAGAGCAAACAAAATATTTGCAACATTGGCCAAACAACATGGAGGATATGAGAAAGTTGGTTGCTTGGAGAAAGATATCAGAAATCATTTAGATAAGGATCGTCGTTTGAATTTAGAATCGGGAGATGCAAATGCAATGTTGGAGTGTTTTATGCTTATGCAAGAAGAAAATCCTAGATTCTTTTATGCAATTGATTTGGATGATGATGATGGTCGTCTAAAAAATGTATTTTGGGTTGATGCAAATGGTAGAGATGATTATCAAGAGTTTGGAGATGTGATTTCATTTGATACAACATATATCACAAACAAATATAAAATGCCATTTGCTCCCTTCATTGGTGTGAATAATCACTTTCAGTCAAGATTGCTTGGTTGTGCATTACTAGCAAATGAGTCCTCGGAGACTTTCATATGGCTTATGAAAACATGGCTTAGGGCAATGGGTGGCAAGCCTCCAAATGCAATCATAACTGACCAAGACAGAGCTATGAAAGTGGCTATTGAAGAGGTATTTCCAAATACTCGACATCGGTTTTGTCTTTGGCATATACTCAGAAAAGTGCCTGAAAAGCTCAGTCACGTAATAAGAAAAAATGATGATGACTTTATGAGATATTTTAACTCATGCATTTACAAGTCTCGTTCCATACAACAGTTTGAAGATAAATGGCAAGAAATGGTAGAAAAATTTCAATTGTCAGAAGATGGGTGGATTCAGTCTTTATATGGAGAACGTGAACATTGGATTCCTGTTTACATGAAAGATACATTTTTTGGTGGTATGTCAACAACTCAAAGATCAGAGAGCATCAACTCTTTTTTTGACAAATATGTAAGTAAGAAAACTACTTTGAAAGAATTTGTTGTAAAATATAAAGTTGCTTTGCAAGATAGAGAAGAAGCAGAAAGGCAGGCTGATTTTAAGACATGGCACAAGCAACCTGTTCTTAAGACTCCATCACCTTTTGAGAAACAAATGTCAATGATTTATACACATGAAGTATTCAAAAAATTTCAAGTTGAATATATGGGATTATCTGGATGTCATCTTATTGATCGAGTCGAATTGAGCTCAGATATGTTCAACTCGACTCATTTTCAACTTTAA 1590 0.3535 MEPIDENEEFVANEITNNESYAGGIEVNNDEEPYLGMEFESQQDAYSFYACYAKRVGFGVCTKSSRRSKLSKQFIDVKYACTRYGKKRESTAQNPRPCLKVECEADLHIKRNYEGKWVIHGFIKDHNHDLFPTYAHYFPSHRKINESQKQCIETLQHVGVRANKIFATLAKQHGGYEKVGCLEKDIRNHLDKDRRLNLESGDANAMLECFMLMQEENPRFFYAIDLDDDDGRLKNVFWVDANGRDDYQEFGDVISFDTTYITNKYKMPFAPFIGVNNHFQSRLLGCALLANESSETFIWLMKTWLRAMGGKPPNAIITDQDRAMKVAIEEVFPNTRHRFCLWHILRKVPEKLSHVIRKNDDDFMRYFNSCIYKSRSIQQFEDKWQEMVEKFQLSEDGWIQSLYGEREHWIPVYMKDTFFGGMSTTQRSESINSFFDKYVSKKTTLKEFVVKYKVALQDREEAERQADFKTWHKQPVLKTPSPFEKQMSMIYTHEVFKKFQVEYMGLSGCHLIDRVELSSDMFNSTHFQL 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01846 529 Coils Coil 445 465 - -
Trre4g01846 529 Pfam FAR1 DNA-binding domain 47 132 IPR004330 -
Trre4g01846 529 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 513 IPR031052 GO:0006355
Trre4g01846 529 Pfam MULE transposase domain 253 346 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01846 Trre-Chr4 15270751 15272340 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre4g01846 MULE 1.3e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01846 - - mtr:112418473 902.123