Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01817 ATGGATCACTATCATAATGATTTTGAAGCTGCCATGCTCATACACACTTCTGCATACTATTCTCGAAAGGCTTCAAACTGGGTCCTAGGAGATTCTTGTCCTGATTATATGCTCAAGGCTGAAGAGTGTTTGAAATGGGAGAAAGATAGAGTTGCTAATTACCCTACAAGAGGTTGGCAGCTGTTAGCGCTCACCGTATCCGCACAACAGAGGTTTAAGGATGCAAAAACTATAGTTGATTTTGCTTTAGATGATGCTGGTATATTACAGGTTGGTCATGCCTTTGTTGATCAGCACTACCATATGTTGCACGAAAGCCCTCAACTTATGCGTAGGTTTTACCAAGAAGTTAGTCAATATGCTTGGTCATCCTTAACCAAATGGAAGAGAAAATGGATATTATTGGCTTACAAGAGTAGGGAAAAGCTTGCTCGACGGCTTCTTTTTTATAAGAGTGCCAATGATGACCATGAGAAGAGTATTTTGACAAAGTTGAAACAACAATACTGGTGGTCAATTTACCTCAAAGATGGAAGGAATGGTCCATGA 549 0.4007 MDHYHNDFEAAMLIHTSAYYSRKASNWVLGDSCPDYMLKAEECLKWEKDRVANYPTRGWQLLALTVSAQQRFKDAKTIVDFALDDAGILQVGHAFVDQHYHMLHESPQLMRRFYQEVSQYAWSSLTKWKRKWILLAYKSREKLARRLLFYKSANDDHEKSILTKLKQQYWWSIYLKDGRNGP 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01817 182 ProSiteProfiles Nuclear transport factor 2 domain profile. 91 123 IPR018222 -
Trre4g01817 182 Gene3D - 82 164 - -
Trre4g01817 182 PANTHER CULLIN 2 54 IPR045093 -
Trre4g01817 182 Pfam Cullin family 3 81 IPR001373 GO:0006511|GO:0031625
Trre4g01817 182 SUPERFAMILY NTF2-like 88 130 IPR032710 -
Trre4g01817 182 SUPERFAMILY Cullin homology domain 139 169 IPR036317 -
Trre4g01817 182 Gene3D Cullin Repeats 1 66 - -
Trre4g01817 182 SUPERFAMILY Cullin repeat-like 3 55 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01817 Trre-Chr4 15020390 15022702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01817 51 87 Calmodulin-binding Proteins AT1G27460 45.946 1.95e-06 45.4