Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01814 ATGTCGAAATGGTTTCTAGGGTTTATCACAAGAAAATCAACAATCCCTAAATTGGATCCTCTTTCTCAACACTTTTCATTCCCAATTTCACTCAGATCATTCAGATACTGCACCACAACATCACAATCAGACACACACCCATATCCAGTATCATACCTCATCAACAATTTTGGTTTCTCACCTCAATCAGCTCTCAGAGCTTTCAACAACAAACGGGTTCGTTTCAAATCACCAGAAAAGCCTAATTCGGTTATCAACTTCTTCAAAGACAATGGTTTTTCACACTCTGACATCCACTCCATCATTAGAAAAGCACCATGCTTACTTTCATCACAACCCAACAATGCAATTTTGCCAAAGTTTCAATTTTTTCTATCCAAAGGTGTTTCTTCCTCTGAAATTGTTTCATTCTTAACTGCAAACCCTACAATTTTACAAGCTAGCTTGGAGAAACGAATAATCCCTCTTTTTGAATTGTTAAGTAGGTTTTTGAAAACCAACGAGGATGTTATTGTTTGCTTAATTCTACGTTCGACTTCATTTCTTATGAATTCCTATTCCCGTATGCTGGTTAATATCAATTTGATGACTGATTTTGGAGTTTCTAATTCTAACATTGCTAAATTGCTTCAAATAAGGCCGTCTATATTTGGTTCAAATGATTTAATTAAGTCATTGGAGGAAGTTAAGGGTTTAGGGTTTGATCCTTCTATGACTACTTTTGGGACTGCTTTGATGGCCAAGAAATGTATAAGTGAAGAACTTTGGAATCAGAAAGTTGATGTCTTTAAGAAATGGGGTTGGTCTGATGAAGTTGTTTTTCAAGCATTTAGGTCATATCCTAGTTTGATGTTGTTTTCAACTGATAAGGTTAATTTGGTGATGACTTTTTGGGTTAATCAATTGGGTTGGAATTCCTTGGCAGTTACTAAATGTCCAAATATGTTTGCTTATAGTTTACATAAAAGGATCATTCCAAGAGCCTCAGTTTTGCATTATCTTTTGATGAAAGGTCTGCGAAAAAAGAATGCAAGCTTGGTTACACCATTTAGTTGTACTGAGAAATTGTTCTTGGACAAATTTGTTTTCAGCTTTAAGGAAGAGTCTGAATATCTATTAAAGCTATATGAGGAAAAAATGAAACTCGCATACACAAAGGAAAACAATGGCATGCCACTCACTAAATAG 1188 0.351 MSKWFLGFITRKSTIPKLDPLSQHFSFPISLRSFRYCTTTSQSDTHPYPVSYLINNFGFSPQSALRAFNNKRVRFKSPEKPNSVINFFKDNGFSHSDIHSIIRKAPCLLSSQPNNAILPKFQFFLSKGVSSSEIVSFLTANPTILQASLEKRIIPLFELLSRFLKTNEDVIVCLILRSTSFLMNSYSRMLVNINLMTDFGVSNSNIAKLLQIRPSIFGSNDLIKSLEEVKGLGFDPSMTTFGTALMAKKCISEELWNQKVDVFKKWGWSDEVVFQAFRSYPSLMLFSTDKVNLVMTFWVNQLGWNSLAVTKCPNMFAYSLHKRIIPRASVLHYLLMKGLRKKNASLVTPFSCTEKLFLDKFVFSFKEESEYLLKLYEEKMKLAYTKENNGMPLTK 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01814 395 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Trre4g01814 395 SMART mt_12 172 202 IPR003690 GO:0003690|GO:0006355
Trre4g01814 395 SMART mt_12 135 166 IPR003690 GO:0003690|GO:0006355
Trre4g01814 395 SMART mt_12 207 235 IPR003690 GO:0003690|GO:0006355
Trre4g01814 395 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Trre4g01814 395 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Trre4g01814 395 FunFam Mitochondrial transcription termination factor-like 149 369 - -
Trre4g01814 395 Pfam mTERF 251 357 IPR003690 GO:0003690|GO:0006355
Trre4g01814 395 Pfam mTERF 85 217 IPR003690 GO:0003690|GO:0006355
Trre4g01814 395 Gene3D Transcription termination factor 3, mitochondrial 166 375 IPR038538 -
Trre4g01814 395 PANTHER CGI-12 PROTEIN-RELATED 50 366 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01814 Trre-Chr4 15007410 15008597 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre4g01814 mTERF 9.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01814 K15032 - mtr:25488156 362.844