Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01801 ATGGATCCTGTAAGGGATGTTGGTAGTGTTGTGGGGACAGTGTTGATTCCCACGCGGTTTGTGTGGCCATATGGTGGGAGAAGTGTTTTTCTCAGTGGTTCTTTCACAAGGTGGTCTGAGCTTTTGCCAATGTCTCCGGTGGAAGGTTGCCCAACAGTATTTCAAGTTATTTATAGATTGCCCCCTGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGACATGATGAGCATCATCCTTACGTACATGGACAATATGGGATTGTCAACACTGTCTTATTGGCAACTGATCCTAACTACATACCTCTTATAACTTCAGACATTGCTTCAGGAAATAACATGGATGTGGATAATGACACTTTTCGCCGAGTGGTCCGGGTGGCAGACAATGCATTGAGTGAGATGCTTCCAAGAATATCAGATACTGATGTACAGATCTCTCGTCAGCGTATTTCTGCATTTCTGTCTAAGCACACAGCTTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTGCATTGGATGTTGATTTACCAGTGAAACAAGCATTTCATATACTGCATGAGCAGGGAATATACATGGCTCCTCTCTGGGACATGTGCAAGGGGCGATTTGTTGGTGTTCTTAGTGCTTTGGATTTTGTCTTAATTCTAAGGGAGTTGAGGAATCGTGGGTCTAATCTGACAGAAGAGGAGCTTGAAACACATACCATATCGGCTTGGAAAGAAGGAAAGTCATATCTAAACAGACAGAACAATGGACCTGGAATTTCATTTTCTAGACATCTTATCCATGCAGGACCATATGATAATCTTAAAGATATTGCCATGAAGATCTTACAAAAGGAGGTTTCAACAGTTCCTATTATCCATTCATCTTCTGAAGATGGTTCCTTTCCACAGTTACTACATCTTGCTTCACTATCAGGAATACTCAAATGCATTTGTAGGTATTTTAGGAATTGCTCTAGTTCATTGCCTATACTACAACTTCCGATCTGTGCAATACCTGTGGGCACATGGGTGCCCAAAATCGGGGAATCAAATCGACGGCCTCTAGCAGTATTGAGACCGAGCTCTTCTCTTGCTTCAGCCCTAAATTTATTAGTTCAAGCTCAAGCAAGTTCAATACCAATTGTTGATGATAATGACTCATTACTGGATATATATTGTCGGAGTGATATAATGGCTTTGGCAAAGGACAGGGCATATACACATATCAATCTTGATGAAATGACTGTTCAACAGGCTTTGCAGTTGGGTCAAGACGCATACGAGCTTAGAAGTCAAAGATGTCAGATGTGTTTGCGTTCTGATTCACTGCATAAAGTGATTGAGCGTTTGGCAAATCCAGGTGTGAGGCGGATTGTTATCGTGGAAGCAGGCAGCAAGCGTTTAGAAGGCATTGTCTCATTGAGCGACATATTCAAGTTCTTTCTCAGTTAG 1449 0.4189 MDPVRDVGSVVGTVLIPTRFVWPYGGRSVFLSGSFTRWSELLPMSPVEGCPTVFQVIYRLPPGYHQYKFFVDGEWRHDEHHPYVHGQYGIVNTVLLATDPNYIPLITSDIASGNNMDVDNDTFRRVVRVADNALSEMLPRISDTDVQISRQRISAFLSKHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIYMAPLWDMCKGRFVGVLSALDFVLILRELRNRGSNLTEEELETHTISAWKEGKSYLNRQNNGPGISFSRHLIHAGPYDNLKDIAMKILQKEVSTVPIIHSSSEDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPICAIPVGTWVPKIGESNRRPLAVLRPSSSLASALNLLVQAQASSIPIVDDNDSLLDIYCRSDIMALAKDRAYTHINLDEMTVQQALQLGQDAYELRSQRCQMCLRSDSLHKVIERLANPGVRRIVIVEAGSKRLEGIVSLSDIFKFFLS 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01801 482 SMART cbs_1 353 401 IPR000644 -
Trre4g01801 482 SMART cbs_1 171 220 IPR000644 -
Trre4g01801 482 SMART cbs_1 432 481 IPR000644 -
Trre4g01801 482 Gene3D Immunoglobulins 16 107 IPR013783 -
Trre4g01801 482 FunFam Sucrose nonfermenting 4-like protein 13 98 - -
Trre4g01801 482 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 143 480 - -
Trre4g01801 482 SUPERFAMILY E set domains 16 97 IPR014756 -
Trre4g01801 482 Pfam CBS domain 434 480 IPR000644 -
Trre4g01801 482 Pfam CBS domain 351 398 IPR000644 -
Trre4g01801 482 SUPERFAMILY CBS-domain pair 152 322 IPR046342 -
Trre4g01801 482 SUPERFAMILY CBS-domain pair 349 481 IPR046342 -
Trre4g01801 482 ProSiteProfiles CBS domain profile. 349 406 IPR000644 -
Trre4g01801 482 Pfam Glycogen recognition site of AMP-activated protein kinase 16 98 IPR032640 -
Trre4g01801 482 Gene3D - 142 325 IPR046342 -
Trre4g01801 482 Gene3D - 341 482 IPR046342 -
Trre4g01801 482 ProSiteProfiles CBS domain profile. 428 482 IPR000644 -
Trre4g01801 482 CDD E_set_AMPKbeta_like_N 17 95 - -
Trre4g01801 482 ProSiteProfiles CBS domain profile. 165 227 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01801 Trre-Chr4 14946031 14954853 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01801 6 99 Protein tyrosine phosphatase (PTP) family AT3G01510 31.250 2.86e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01801 - - gmx:100785692 835.099