Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01795 ATGTTCAAACAATTTCTCTACCACAATGCATTTCGCTTATCAACAACAACACTGCACCATTCACCCTTTCAATTTTCTCTCAAATTCCTCACAACTTCACCCTCACACCCATTCGCTGTATCTTATCTCATCGACAAATTCGGTTTCTCATCAGAATTCGCTTTCAAAGCTTCAAAACTCCTTCATTTCAAAACCTCAGAAAAACCCGATTCAGTTCTCAATTTCTTCACAACTCACGGTTTCACCGATTCAGATATTCAAAACATCATCAAAAGAGAACCCTGGCTTCTTTCTTGTGATACCCAAAAAAGACTTCTTCCAAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCTAATTCTGATATTGTTCGTATGGTTGTAGTTAACCCTAGATTCATGAAATTGAGTTTGAATAATCGTGTTATCCCTCTTTATAAATTGGTATCTCGGTTCCTTAAATCGGATCAAAGGGCTATTGCTAAAATAATTTCAATTCCCTCTTTGATTTCTAATGATTATGTGATTCCTAATATTAATCTAATGGTTGATAAGGGTGTTTGCGATTCGAGTATTTATAGAATTCTTCGCGTTAAACCTTATATTGTCTTTTGTAAGCCTAGGGTTTTAGAGGAGATGGTAGAGGAATTGAAAAACATGGGACTTGATCGTTCTAAAACATATTTTGGTGATGCATTGGTTGCTAAGAGAGGTTTAAGTAAATCCAAATGGGATGAGAAAATTGATACTTATAAGAAATGGGGTTGGTCCTGGGAAACTATTTTGGAAGCTATTAGGACACAGCCAAAATGTATGTTAGTTTCGATTGATAAAATCAATAAGGTGATGCGGTTTTGGGTTTATGATTTAGGTTGGGATTCTTCTTATCTTGCAAAGGGACCGGGGATGTTTAGTTATTCTTTGGAGAAAAGAATCATTCCAAGAGCTATGGTTGTCTTTTGTCTTCAAACTAAGGGTTTGAGGAGCGACAGTACCAGCTTGCTTTCTCCATTTTTTGTGTCTGAGAAATTGTTTTTGGAAAGGTTTGTGTTCTGTTTTAAAGAGGAGGAAATTGCTCATCTATTGAAGTTATATGGCACTATGATGAAGGTAGGAGATGCGAAGACTTGCTGTTTACCACATCAGAATAAAAACACAGTGGCAAAGATTGGAGGCGGAGATGGGCTTCACGGAGATAGTGAGGCAGCATTTTGGGCGTTGATGGAGAAGATGAAAAGTGAAACGGGGAAGAAAGATGGAAGAAGGCGTTGTTGA 1272 0.3726 MFKQFLYHNAFRLSTTTLHHSPFQFSLKFLTTSPSHPFAVSYLIDKFGFSSEFAFKASKLLHFKTSEKPDSVLNFFTTHGFTDSDIQNIIKREPWLLSCDTQKRLLPKFQFLLSKGASNSDIVRMVVVNPRFMKLSLNNRVIPLYKLVSRFLKSDQRAIAKIISIPSLISNDYVIPNINLMVDKGVCDSSIYRILRVKPYIVFCKPRVLEEMVEELKNMGLDRSKTYFGDALVAKRGLSKSKWDEKIDTYKKWGWSWETILEAIRTQPKCMLVSIDKINKVMRFWVYDLGWDSSYLAKGPGMFSYSLEKRIIPRAMVVFCLQTKGLRSDSTSLLSPFFVSEKLFLERFVFCFKEEEIAHLLKLYGTMMKVGDAKTCCLPHQNKNTVAKIGGGDGLHGDSEAAFWALMEKMKSETGKKDGRRRC 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01795 423 SMART mt_12 87 118 IPR003690 GO:0003690|GO:0006355
Trre4g01795 423 SMART mt_12 293 327 IPR003690 GO:0003690|GO:0006355
Trre4g01795 423 SMART mt_12 192 222 IPR003690 GO:0003690|GO:0006355
Trre4g01795 423 SMART mt_12 123 154 IPR003690 GO:0003690|GO:0006355
Trre4g01795 423 SMART mt_12 261 292 IPR003690 GO:0003690|GO:0006355
Trre4g01795 423 PANTHER CGI-12 PROTEIN-RELATED 35 355 IPR003690 GO:0003690|GO:0006355
Trre4g01795 423 Pfam mTERF 73 224 IPR003690 GO:0003690|GO:0006355
Trre4g01795 423 Pfam mTERF 238 344 IPR003690 GO:0003690|GO:0006355
Trre4g01795 423 Gene3D Transcription termination factor 3, mitochondrial 49 168 IPR038538 -
Trre4g01795 423 Gene3D Transcription termination factor 3, mitochondrial 169 356 IPR038538 -
Trre4g01795 423 FunFam Mitochondrial transcription termination factor-like 137 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01795 Trre-Chr4 14873123 14876072 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre4g01795 mTERF 4.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01795 K15032 - mtr:25488156 338.191