Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01794 ATGTTCAAACAATTTCTCTACCACAATGCATTTCGCTTATCGACAACAACACTGCACCATTCACGTTTCCAATTTCCTCTCAAATTCCTCACAACTTCACCCTCACACTCACACCCATTCGCTGTATCTTATCTCATCGACAAATTCGGTTTCTCACCAGAATTCGCTTCCAAAGCTTCAAAACTCGTTCATTTCAAAACCTCAAAACAACCCGAATCAGTTCTCAATTTCTTCACAACTCACGGTTTCACCGATTCAGATATTCACAACATCATCAAAAGAGAACCATGGCTTCTTTCCTGTGATACCCAAAAAAGACTCCTCCCAAAGTTTCAATTTTTACTCTCCAAAGGCGCTTCTAATTCCGACATTGTTCGTATGGTTTTAGGTAACCCTAGATTCATGAAATCGAGTTTGAATAATCGTGTTATCCCTCTTTATAAATTGGTATCTCGGTTCCTTAAATCGGATCAAAAGGCTATTGCTTCTATAATTTCAATTCCCTCTTTGCTTTCTAGTGATTATGTGATTCCTAATGTTAATTTAATGGTTGATAAGGGTGTTTGTGATTCGAGTATTTTTAGAATTTTTCGTACTAGACCGAATATTATCTTTTGTAGGCCTAGGGTTTTAGGGGAGATGGTGGATGAATTGAAAAACTTGGGGTTTGATCCTTCTAAAGCATATTTTGGTGATGCCTTGCTTGCTAAGATAGGTTTAAGTAAATCCAAATGGGATGAGAAAATTGATACTTTTAAGAAATGGGGTTGGTCTGAGGAAACTATTTTGGAAGCTATTAGGAAGCAGCCGAAATGTATGTTAGTTTCAATCGATAAAATCAATAAGGTGATGCGGTTTTGGGTTAATGATTTAGGTTGGGATTCTTCTTATCTTGCTAAGGGACCAGGGATATTTCTTTATTGTTTGGAGAAAAGGATCATTCCAAGAGCTATGGTTGTCTTTTGTCTTCAAACTAAGGGTTTGAGAAGCGAGAGTGCCAGCTTGCTTTCTCCATTTTATGTGTCGGAGAAATTGTTTTTGGATAGGTATGTGTTCTGCTTTAAAGACGACGAAACTGCTCATCTATTGAATTTATATCACACTATGATGAAGGTGGGAGATGAGAAGATAAGTAGCATAGGCGATTCATGTCAAAAATCATGTTTGTAA 1170 0.3718 MFKQFLYHNAFRLSTTTLHHSRFQFPLKFLTTSPSHSHPFAVSYLIDKFGFSPEFASKASKLVHFKTSKQPESVLNFFTTHGFTDSDIHNIIKREPWLLSCDTQKRLLPKFQFLLSKGASNSDIVRMVLGNPRFMKSSLNNRVIPLYKLVSRFLKSDQKAIASIISIPSLLSSDYVIPNVNLMVDKGVCDSSIFRIFRTRPNIIFCRPRVLGEMVDELKNLGFDPSKAYFGDALLAKIGLSKSKWDEKIDTFKKWGWSEETILEAIRKQPKCMLVSIDKINKVMRFWVNDLGWDSSYLAKGPGIFLYCLEKRIIPRAMVVFCLQTKGLRSESASLLSPFYVSEKLFLDRYVFCFKDDETAHLLNLYHTMMKVGDEKISSIGDSCQKSCL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01794 389 PANTHER CGI-12 PROTEIN-RELATED 37 355 IPR003690 GO:0003690|GO:0006355
Trre4g01794 389 Gene3D Transcription termination factor 3, mitochondrial 164 357 IPR038538 -
Trre4g01794 389 SMART mt_12 89 120 IPR003690 GO:0003690|GO:0006355
Trre4g01794 389 SMART mt_12 194 224 IPR003690 GO:0003690|GO:0006355
Trre4g01794 389 SMART mt_12 125 156 IPR003690 GO:0003690|GO:0006355
Trre4g01794 389 SMART mt_12 295 329 IPR003690 GO:0003690|GO:0006355
Trre4g01794 389 SMART mt_12 263 294 IPR003690 GO:0003690|GO:0006355
Trre4g01794 389 FunFam Mitochondrial transcription termination factor-like 139 358 - -
Trre4g01794 389 Pfam mTERF 75 224 IPR003690 GO:0003690|GO:0006355
Trre4g01794 389 Pfam mTERF 180 346 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01794 Trre-Chr4 14868179 14869348 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre4g01794 mTERF 3.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01794 K15032 - mtr:25488156 339.347