Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01788 ATGGAGCTTGGATCGGTGGTCGAAGCAGTTTCTGCGGATGTTGGTGGTGGCAACGGTGCTCCTCTCTACATTGAAAGCTTCCAAAGCCTATGCATGCATTGCGGTGAAAATGGTACTACAAATTCCTTCATCACTCTCATTCCTCACTTCAAAAAGATTTGGTTGTCTGCTTTCGATTGTCCTCACTGTGGTGACAAGAACAATGAAGTAATGTTTGTTGGTGATATTCCACCGCACTGTTGCTGTTACACCCTGAAGATCCCATCCGGAAATTCAGAGATGCTCAATAGGCAAGTGGTCAAATCAGAATACGCTACCATTAAGATACCAGAATTGGATTTTGAGATTCAATCAGAGGCTCGGTGTGGTAGTCTATCAACGGTAGAAGGGATACTGATGCGAGCTGCTGATGACCTTCAAGCCCTTCAAGAGGAACACAAAAAAGTGACTCCGGAGACAGCTGAAGCAATTGATCAGTTCTTGGTAAAATTGCGAGCCTGTGCAACAGGAGAATCATCATTTACATTTGTTATTGACGATCCTGCTGGAAATAGCTTCATTGAAAACCCGTTTGCACCATCATCTGATCCATCACTAACCATCAAGTTTTATGATCGAACTCCTGAGAAACAAGCATCATTGGGATATCAAGTGAGGGAAGAAGAACCACACGGGTCAGTAGGGGCAGCAGCAGGTCATAGAGCCATTGCACAGAGTAACAGCGCAGAAATTGCAGAAGCCTTATTTCGATATACAGCACCAGAGGAGGTGTATGCTTTCCCGGTAACTTGTGGTTGTGGTAGTGGATGTGAAACTCGAATGTTTCCAATTGATATTCCGTACTTCCAAGAAGCAATTGTTATGGCATCCACTTGTGATGCTTGTGGTTACCGCAGCTCTGAGTTGAAAGCTGGTGGAGAATTTTCAAAAAAAGGAAAAAGCATTACTCTTTCCGTGCAAAACATTAACGACCTAAGCCGTGATGTAATAAAGTCTGATACTGCAAGTATAAAAATTCCCGAACTTGACTTCGAGCTGACAAGTGGCAGTCGCACTATCGGAGGAGTTGTTACAACTGTTGAAGGCCTTGAGAGGATCCATGGTTTTACTTTCGGAGATAGTCTTGAGGAACATAGTAGAAACAAATGGCTAGACTTTGAGGACAGGCTAAACAAGATTCTTAGCTTGGAAACACCTTGGACTTTAATTCTTGATGATGCATTAGCATGCTCTTTTATAGCACCTGCAACTGATAATCTCGAAGACGACAAACAATTAATGTATGAGGAATATGAGAGGACATGGGAGCAAGAGGAAGAATTAGGTCTGCATCAGATGGACACCACTTCTGCCGATGCTGCGTATGAATCATAA 1374 0.4323 MELGSVVEAVSADVGGGNGAPLYIESFQSLCMHCGENGTTNSFITLIPHFKKIWLSAFDCPHCGDKNNEVMFVGDIPPHCCCYTLKIPSGNSEMLNRQVVKSEYATIKIPELDFEIQSEARCGSLSTVEGILMRAADDLQALQEEHKKVTPETAEAIDQFLVKLRACATGESSFTFVIDDPAGNSFIENPFAPSSDPSLTIKFYDRTPEKQASLGYQVREEEPHGSVGAAAGHRAIAQSNSAEIAEALFRYTAPEEVYAFPVTCGCGSGCETRMFPIDIPYFQEAIVMASTCDACGYRSSELKAGGEFSKKGKSITLSVQNINDLSRDVIKSDTASIKIPELDFELTSGSRTIGGVVTTVEGLERIHGFTFGDSLEEHSRNKWLDFEDRLNKILSLETPWTLILDDALACSFIAPATDNLEDDKQLMYEEYERTWEQEEELGLHQMDTTSADAAYES 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01788 457 Gene3D ZPR1, zinc finger domain 256 305 IPR042452 -
Trre4g01788 457 Coils Coil 125 145 - -
Trre4g01788 457 FunFam Zinc finger protein ZPR1 253 306 - -
Trre4g01788 457 FunFam zinc finger protein ZPR1 75 216 - -
Trre4g01788 457 Pfam ZPR1 zinc-finger domain 265 413 IPR004457 GO:0008270
Trre4g01788 457 Pfam ZPR1 zinc-finger domain 29 188 IPR004457 GO:0008270
Trre4g01788 457 Gene3D ZPR1, A/B domain 75 216 IPR042451 -
Trre4g01788 457 Gene3D ZPR1, A/B domain 308 443 IPR042451 -
Trre4g01788 457 SMART zpr1 29 189 IPR004457 GO:0008270
Trre4g01788 457 SMART zpr1 262 415 IPR004457 GO:0008270
Trre4g01788 457 NCBIfam ZPR1 zinc finger domain 265 446 IPR004457 GO:0008270
Trre4g01788 457 NCBIfam ZPR1 zinc finger domain 31 216 IPR004457 GO:0008270
Trre4g01788 457 Gene3D ZPR1, zinc finger domain 23 74 IPR042452 -
Trre4g01788 457 PANTHER ZINC FINGER PROTEIN ZPR1 16 456 IPR040141 -
Trre4g01788 457 FunFam Zinc finger protein zpr1 307 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01788 Trre-Chr4 14821144 14826765 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01788 1 457 C2H2 Transcription Factor Family AT5G22480 65.289 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01788 K06874 - gmx:100814878 670.618