Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01782 ATGTTGAAAGCTTTTCTATGCTACAATGCTTTTTGCATACCAACAACAATCTCGACAACACTCTACCACTACTCACCCTCTCAATTTTCTGTAAAATGCATCACCACTTCATCCTCAAACTCAAACTCATTCTCACCAGAATCTGCAATCAAAGCTTCCAATCAAGTTGGTTCCAAGAACCCTAAAAACCCAAAATCATTTTTCACCTTCTTAAGAACCCACGGTTTTACAGACTCAGAGATACAAGCCATCATCGAAAACGAACCAGAGCTTCTTTCCTGCGACCCCAGCAAAATATTATTGCCAAAGTTTCAATTTTTACGCTCCAAAGGTGCTTCTACCTCTGACATTGTTCGTATAACTGTTTATGATTATGGGTTCAGGAAATTAAGCTTGAGGGAACTTGAAATTAAATTTGAATTTTTTCTATCAAAAGGTGTTTCTTCCTCTGAAATTGTTTCATTGTTAACTCGAAACCCTCTAATTTTACAAGCTAGCTTGGAGAAACAAATAATCCCTCTTTTTGAATTGTTAAGTGGATACTTGAAAATCAGGGATGTAATTATTTGCTTAATTCGAAAATGGTTTTCATTTGATCCTATTTCATATGACCTTATTGTGGAAAATATCAATTTGATGAATAATTTTGGAGTTTCTAATTATAACATTGCTACATTGTTTCGAATAAGGCCGTCTATATTTGGTTCAAATGATTTGATTAAGTCGTTGGAGGAAGTTAAGGGTTTAGGGTTTAAACCTTCAAGGACTACTTTTGGGGCTGCTTTGGTAGCCAGGAAATGTATAAGTAAAGAACTTTGGAATCAGAAAGTTGATGTCTTTAAGAAATGGGGTTGGTCTGAAGAAACTGTTTTACAAGAATTTAGGTCATGTCCTAGTTTGATGTTGGTTTCGATTGATAAGATTGATGCGGTGATGAATTTTTGGGTCAAACAAATGGGTTGGAATTCCTTGTTACTTACTAAATATCCACTTCTGTTTACTCATAGTTTATCTAAAAGGATCATTCCAAGGGCCTTTGTTTTGCAATATCTTTTGATGAAAGGTTTGCGAGAAAAGAGTGCAAGCTTATGCAACCCGTTTAATTATACCGAGAAGGTGTTCTTGGAAAAGTGTGTTTTCAAATATAAGGGGGAGTCTGATTATCTATTAAAGCTATATGAGGAAAAAATGAAACTCGCATACTCAGGAAAACGAAGGCATGCAACTGACTGA 1233 0.3536 MLKAFLCYNAFCIPTTISTTLYHYSPSQFSVKCITTSSSNSNSFSPESAIKASNQVGSKNPKNPKSFFTFLRTHGFTDSEIQAIIENEPELLSCDPSKILLPKFQFLRSKGASTSDIVRITVYDYGFRKLSLRELEIKFEFFLSKGVSSSEIVSLLTRNPLILQASLEKQIIPLFELLSGYLKIRDVIICLIRKWFSFDPISYDLIVENINLMNNFGVSNYNIATLFRIRPSIFGSNDLIKSLEEVKGLGFKPSRTTFGAALVARKCISKELWNQKVDVFKKWGWSEETVLQEFRSCPSLMLVSIDKIDAVMNFWVKQMGWNSLLLTKYPLLFTHSLSKRIIPRAFVLQYLLMKGLREKSASLCNPFNYTEKVFLEKCVFKYKGESDYLLKLYEEKMKLAYSGKRRHATD 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01782 410 PANTHER CGI-12 PROTEIN-RELATED 37 120 IPR003690 GO:0003690|GO:0006355
Trre4g01782 410 FunFam Mitochondrial transcription termination factor-like 167 386 - -
Trre4g01782 410 SMART mt_12 291 322 IPR003690 GO:0003690|GO:0006355
Trre4g01782 410 SMART mt_12 82 113 IPR003690 GO:0003690|GO:0006355
Trre4g01782 410 SMART mt_12 153 185 IPR003690 GO:0003690|GO:0006355
Trre4g01782 410 SMART mt_12 323 357 IPR003690 GO:0003690|GO:0006355
Trre4g01782 410 SMART mt_12 224 252 IPR003690 GO:0003690|GO:0006355
Trre4g01782 410 Gene3D Transcription termination factor 3, mitochondrial 40 127 IPR038538 -
Trre4g01782 410 Gene3D Transcription termination factor 3, mitochondrial 188 389 IPR038538 -
Trre4g01782 410 Pfam mTERF 134 234 IPR003690 GO:0003690|GO:0006355
Trre4g01782 410 Pfam mTERF 206 374 IPR003690 GO:0003690|GO:0006355
Trre4g01782 410 Pfam mTERF 69 120 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01782 Trre-Chr4 14795091 14796323 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre4g01782 mTERF 5.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01782 K15032 - mtr:25488156 276.559