Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01778 ATGTCGAAATGGTTTCTAGGGTTTATCACAAGAAAATCAACAATCCCTAAATTTGACCTTCTTTCTCAACACTTTTCATTCCCAATTTCACTCAGATTCAGATACTTCACCACAACATCAGAATCAAACACACACCCATATCCAGTATCATACCTCATCAACAATTTTGGTTTCTCACCACAATCAGCTCTCAAAGCTTTCAACCACAGGCAGGTTCGTTTCAAATCTCCAGATAAGCCTAATTCAGTTATCAACTTCTTCAAAAATCATCATTTTTCACACTCCAACATACGCATCATCATTACAAATGCACCATGGTTACTTTCATCAAAACCCCATAAAAGCTTATTGCCAAAGTTTCAATTTTTTCTATCAAAAGGTGTTTCTTCCTCTGATATTGTTTCATTGTTGACTGAAAGCCCTAGAATTTTAAAATTTAGCTTGGAGAAACGAATAATCCCTCTTTTTGAATTATTAAGTAGGTTCTTGAAAACTAACCAGGATGTCATTGTTTGCTTAATTCGACATACGACTGCATTTCAAATGAATACCAATCCACGTATGCTAGTTAATATCAATTTGATGACCGATTTTGGAGTTTGTGATTCTAACATAGCTAGATTACTTCAAGAAAGGCCGTCTATATTTGGTTCAAATGATTTGATTAAGTCGTTGGAGGAAGTTAAGGGTTTAGGGTTTGATCCTTCAATGACTATTTTTGGGACTGCTTTGATGGCCAAGAAATGTATTAGTAAAAAACTTTGGAATCAGAAAGTTGATGTCTTTAAGAAATGGGGTTGGTCTGATGAAGCTGTTCTTCAAACATTTAGGTCATATCCTAAGTTGATGATGGTTTCAATTGATAAGGTTAATTTGGTGATGACTTTTTGGGTCAATCAATTGGGTTGGAATTCCCTGGAACTTACTAAATGTCCACTTATATTTAGTTTTAGTTTGGAGAAAAGGGTCATTCCAAGGGCCTCAATTTTACAATTTCTTTTGATGAAAGGTTTGCGAAAAAAGAATGCAAGCTTAGTTACACCATTTATTTATACGGAGAAATTGTTCTTGGACAAGTTTGTTTTCAACTTTAAGGAGGAGTCTGATTATCTATTAAAGCTATATCAGGACAAAATGAAACTTGCATACTCAGAGGAAAACAAAGGCATGCCACTGACTGAATAG 1185 0.3468 MSKWFLGFITRKSTIPKFDLLSQHFSFPISLRFRYFTTTSESNTHPYPVSYLINNFGFSPQSALKAFNHRQVRFKSPDKPNSVINFFKNHHFSHSNIRIIITNAPWLLSSKPHKSLLPKFQFFLSKGVSSSDIVSLLTESPRILKFSLEKRIIPLFELLSRFLKTNQDVIVCLIRHTTAFQMNTNPRMLVNINLMTDFGVCDSNIARLLQERPSIFGSNDLIKSLEEVKGLGFDPSMTIFGTALMAKKCISKKLWNQKVDVFKKWGWSDEAVLQTFRSYPKLMMVSIDKVNLVMTFWVNQLGWNSLELTKCPLIFSFSLEKRVIPRASILQFLLMKGLRKKNASLVTPFIYTEKLFLDKFVFNFKEESDYLLKLYQDKMKLAYSEENKGMPLTE 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01778 394 PANTHER CGI-12 PROTEIN-RELATED 49 363 IPR003690 GO:0003690|GO:0006355
Trre4g01778 394 SMART mt_12 206 234 IPR003690 GO:0003690|GO:0006355
Trre4g01778 394 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Trre4g01778 394 SMART mt_12 273 304 IPR003690 GO:0003690|GO:0006355
Trre4g01778 394 SMART mt_12 305 339 IPR003690 GO:0003690|GO:0006355
Trre4g01778 394 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Trre4g01778 394 FunFam Mitochondrial transcription termination factor-like 148 368 - -
Trre4g01778 394 Gene3D Transcription termination factor 3, mitochondrial 165 371 IPR038538 -
Trre4g01778 394 Pfam mTERF 251 356 IPR003690 GO:0003690|GO:0006355
Trre4g01778 394 Pfam mTERF 84 216 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01778 Trre-Chr4 14778574 14779758 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre4g01778 mTERF 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01778 K15032 - mtr:25488156 373.244