Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01777 ATGTCGAAATTGTTTCCATGTCCGACGAATATTGTTTTAGGGTTCATCACAACAAACCCTAAAATCGACCCTTTTTCTCAATACTGTTCGTTCCCAATTTCACTCAGATCATTCAGATACTGCACCACAACAACAGCAACAATAGCAACAACAACAACAGCATCAGAATCAGACATATACCCATTTGCTGTATCATATCTCATCAACAATTTTGGTTTCTCACATGAATCAGCTCTCAAAGCTTTCAACAACAAACAGGTTCGTTTCAAATCACCAGAAAAACCTAATTCGGTTATCAACTTCTTCAAAGACAATGGTTTTTCAGACTCCGACATACTAATCATCATTAGAAAACAACCATGGTTACTTTCATCACAACCCCATAAAAGCTTATTGCCAAAGTTTCAATTTTTTCTATCAAAAGGTGTTTCTTCCTCTGATATTGTTTCATTGTTAACTGCAAACCCTAAAATTTTACAAAGTAGCTTGGAGAAACAAATAATCCCTCTTTTTGAATTATTAAGTAAGTTCTTGAAAACCGACAAGGATGTCATCTTTTGCTTAATTCGACATTCATATTCATTTGATCTTATTTCATATGACCTTATTGTGGCTAATATCAATTTGATGACTGATTTTGGAGTTTCTAATTCCAACATTGCTATTTTGCTTCAAGAAAGGCCGTCTATATTTGGTTCAACTGATTTGATTAAGTCATTGGAGGAAGTTAAGGGTTTAGGGTTTAATCCTTCAATGACTACTTTTGGGACTGCTTTGAAGGCCAAGAAATGTATAAGTAAAAAACTTTGGAATCAGAAAGTTGATGTCTTTAAGAAATGGGGTTGGTCTGATGAAGATGTTTTTCAAGCATTTAGGTCTAATCCTACTTTGATGTTGGTTTCAATTGATAAGGTTAATTTGGTGATGACTTTTTGGGTTAATCAAATGGGTTGGAATTCCTTGGCAGTTACTAAATGTGCACATATGTTTAGTTATAGTTTACATAAAAGGATCATTCCAAGAGCCTCAGTTTTGCAATATCTTTTGATGAAAGGTCTGCGAAAAAAGAATGCAAGCTTAGTTACACCATTTATTTATACGGAGAAATTGTTCTTGGACAAGTTTGTTTTCAACTTTAAGGAGGAGTCTGATTATCTATTAAAGCTATATCAGGACAAAATGGAACTTGCATACACAAAGGAAAATAATGGCATGCCACTGACTGAATAG 1230 0.3407 MSKLFPCPTNIVLGFITTNPKIDPFSQYCSFPISLRSFRYCTTTTATIATTTTASESDIYPFAVSYLINNFGFSHESALKAFNNKQVRFKSPEKPNSVINFFKDNGFSDSDILIIIRKQPWLLSSQPHKSLLPKFQFFLSKGVSSSDIVSLLTANPKILQSSLEKQIIPLFELLSKFLKTDKDVIFCLIRHSYSFDLISYDLIVANINLMTDFGVSNSNIAILLQERPSIFGSTDLIKSLEEVKGLGFNPSMTTFGTALKAKKCISKKLWNQKVDVFKKWGWSDEDVFQAFRSNPTLMLVSIDKVNLVMTFWVNQMGWNSLAVTKCAHMFSYSLHKRIIPRASVLQYLLMKGLRKKNASLVTPFIYTEKLFLDKFVFNFKEESDYLLKLYQDKMELAYTKENNGMPLTE 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01777 409 Gene3D Transcription termination factor 3, mitochondrial 180 385 IPR038538 -
Trre4g01777 409 FunFam Mitochondrial transcription termination factor-like 163 383 - -
Trre4g01777 409 SMART mt_12 288 319 IPR003690 GO:0003690|GO:0006355
Trre4g01777 409 SMART mt_12 113 144 IPR003690 GO:0003690|GO:0006355
Trre4g01777 409 SMART mt_12 221 249 IPR003690 GO:0003690|GO:0006355
Trre4g01777 409 SMART mt_12 320 354 IPR003690 GO:0003690|GO:0006355
Trre4g01777 409 SMART mt_12 149 180 IPR003690 GO:0003690|GO:0006355
Trre4g01777 409 PANTHER CGI-12 PROTEIN-RELATED 63 378 IPR003690 GO:0003690|GO:0006355
Trre4g01777 409 Pfam mTERF 266 371 IPR003690 GO:0003690|GO:0006355
Trre4g01777 409 Pfam mTERF 99 297 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01777 Trre-Chr4 14775361 14776590 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre4g01777 mTERF 4.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01777 K15032 - mtr:25488156 370.163