Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01775 ATGCCGTTTTATGTCTTGCACGTAGATAAGAAGATATGGAAGACTCAAGCATGCAAGCTCCAGCTGGATGCATCAATTTTGGATGGGCAAATTGCTCATAACTTAAAATTTATTCTGGTTGGTTATAGGGTATCATCAAAATTCCACCCTTTTATCCAACACTTTTCGTTCCCATTTTCACCCTCCACATTCTGCAGCACTGCATCAGAATCAGAATCAGAATCAGAATCAGACACACACCCATTTGCTGTATCATACCTCATCAACAATTTTGGATTCTCAACTCAATCAGCTCTCAAAGCTTTCAACCAAAAAGAGGTTCTTTTCAAATCTCCAGATAAGCCTAATTCAGTTCTTACCTTTTTTAAAAATCATGAATTTTCAGACTCCAACATACGCACAATCATTAGAAAACAACCATGGTTACTTTCAGCAAAACCCCATCAAAGGTTATTGCCAAAGTTTCAATTTTTTCTATCCAATGGTGTTTCTTCTTCAGATATTGTTTCATTGTTAACTGCATACCCTAGAATTTTACAATTTAGCTTGGAGAAACGAATAATCCCTCTTTTTGAATTATTAAGTAGATTCTTCAAAACCAACAAGGATGTCATTGTTTGCTTAATTCAAAATTCGATGGCGATTGGTTGTAATCCGTATCACCTTATTGTGGCTAATATCAACTTGATGACTGATTTTGGATTTTGTGATACTAACATAGCTAGATTGCTTCAAACAAGGCCATCTATATTTGGTTCAAATGATTTGATTAAGTCATTGGAGGAAGTTAAGGGTTTAGGGTTTAATCCTTCAATGACTACTTTTGTGGTAGCTTTGATGGCCAAGAAATGTATGACTAAAAAACTTTGGAATCAGAAAGTTGATGTCTTTAAGAAATGGGGTTGGTCTGATGAAGATGTTTTAGAAGCATTTAAAAGGCAGCCTCAGTGTATGTTAACATCCATTGATAAAATAAATGCAGTAATGAGTTTTTGGGTTAATCAGTTGGGTTGGGATGCTACGGCCATTGTCAAACAACCAGGTGTTTTTGGGTCCAGTCTAGAGAGAAGGATCGAACCAAGGGCCACAGTACTGCAATATCTTCTGAAAAATGGTTTACTAAAAAATAAAGCTAGCATAACTATTCCAATCTTAGTCACCGATAAGTTGTTCCTTGAAAGATATATAAACCGTTATAAGGAAGAGTCGTCTTTATCTATTAAAGCTTTATGCAGAAAAATTAAATGTTGCACACGCCAGGGACAAAATTGA 1272 0.3561 MPFYVLHVDKKIWKTQACKLQLDASILDGQIAHNLKFILVGYRVSSKFHPFIQHFSFPFSPSTFCSTASESESESESDTHPFAVSYLINNFGFSTQSALKAFNQKEVLFKSPDKPNSVLTFFKNHEFSDSNIRTIIRKQPWLLSAKPHQRLLPKFQFFLSNGVSSSDIVSLLTAYPRILQFSLEKRIIPLFELLSRFFKTNKDVIVCLIQNSMAIGCNPYHLIVANINLMTDFGFCDTNIARLLQTRPSIFGSNDLIKSLEEVKGLGFNPSMTTFVVALMAKKCMTKKLWNQKVDVFKKWGWSDEDVLEAFKRQPQCMLTSIDKINAVMSFWVNQLGWDATAIVKQPGVFGSSLERRIEPRATVLQYLLKNGLLKNKASITIPILVTDKLFLERYINRYKEESSLSIKALCRKIKCCTRQGQN 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01775 423 SMART mt_12 241 269 IPR003690 GO:0003690|GO:0006355
Trre4g01775 423 SMART mt_12 169 200 IPR003690 GO:0003690|GO:0006355
Trre4g01775 423 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Trre4g01775 423 SMART mt_12 340 374 IPR003690 GO:0003690|GO:0006355
Trre4g01775 423 SMART mt_12 308 339 IPR003690 GO:0003690|GO:0006355
Trre4g01775 423 Gene3D Transcription termination factor 3, mitochondrial 181 405 IPR038538 -
Trre4g01775 423 PANTHER CGI-12 PROTEIN-RELATED 79 402 IPR003690 GO:0003690|GO:0006355
Trre4g01775 423 FunFam Mitochondrial transcription termination factor-like 183 403 - -
Trre4g01775 423 Pfam mTERF 119 313 IPR003690 GO:0003690|GO:0006355
Trre4g01775 423 Pfam mTERF 225 391 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01775 Trre-Chr4 14740908 14744079 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre4g01775 mTERF 3.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01775 K15032 - mtr:25488156 365.155