Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01772 ATGCTTCGTTACATAATCTTCAATTCCAACCATTACAGAACCCTAAACCCCCAAAAATCTTACCCTCTTTTCCCATTCCAATTTTCTCACAAATTCAAATTCTGCACCACATCTTCAGCTTCCGAATCTGAATCTGAATCTGAATCTGAATCAGACTCATTCGCTGTTTCCTACCTCATCAACAACATCGGTTTCACTCGTGAAACAGCTCTTAAAGCTTTAAAACGAGTTCGTTTCAAATCCCCACAAAAAGCCAATTCAGTTTTCACTTTCTTCAGAAACTTCGGTTTTTCAGATACCAACATAAAGAAAATCATCATAAAAGAACCATGGCTTCTTAATTCAGATACCCACAATTCAATTCTTCCAAAGATTCAATTTTTCCTCTCCAAAGGTGCTTCAATCTCTGAAATTTCTCGCCTTTTAACCGTCAGCCCTAGAATTTTACAATTTAGTTTGGAGAATAGAATTATCCCTCTTTTTGAATTTTATAATAAGATTTTGAAATCTGATAAAGCTACAATTTGTTGCATGATTCGAAATTCGATTCTTTTGTCTTACAATCTTGCTCCTGTTAATGTTAAGTTGTTAATTGATTATGGAGTTTGTGATTCTAGTATTGCTAAATTGCTTTTGACAAGACCAACTACACTTGGTTCAAGTGATTTGATTAATTCTTTGGAGGAAGTTAAGGGTTTAGGGTTTAATCCTTCAAATTCCACTTTTGGGATAGCTTTGGTTGCAAAGAAATGTATGAGTAAAAAACTTTGGGATGAGAAAGTTGATGCCTTTAAGAAATGGGGTTGGTCTGATGAAGATGTTGTGGAATCATTTAGGTTGCATCCTAGTTTGATGTTGTCTTCAGTTGATAAGATTAATTTGGTGATGAGTTTTTGGGTCAATCAATTGGGTTGGAATTCTTTGGCACTTACTAGAAAGCCGCAAATTATCGGCTTTAGTTTGCAGAAAAGGATCATTCCGAGGGCATTAGTTGTGCAATATCTTCTGATGAAAGGTTTGAGGAAAAAGAGAACATTGACATGCCATTCATCAAATAGGAACAACAAAGACAAATGGATTCGGAGTTGGGAGAATTTCTTTCTCAACACTTCATTTCTTAGATAA 1125 0.3511 MLRYIIFNSNHYRTLNPQKSYPLFPFQFSHKFKFCTTSSASESESESESESDSFAVSYLINNIGFTRETALKALKRVRFKSPQKANSVFTFFRNFGFSDTNIKKIIIKEPWLLNSDTHNSILPKIQFFLSKGASISEISRLLTVSPRILQFSLENRIIPLFEFYNKILKSDKATICCMIRNSILLSYNLAPVNVKLLIDYGVCDSSIAKLLLTRPTTLGSSDLINSLEEVKGLGFNPSNSTFGIALVAKKCMSKKLWDEKVDAFKKWGWSDEDVVESFRLHPSLMLSSVDKINLVMSFWVNQLGWNSLALTRKPQIIGFSLQKRIIPRALVVQYLLMKGLRKKRTLTCHSSNRNNKDKWIRSWENFFLNTSFLR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01772 374 FunFam Mitochondrial transcription termination factor-like 153 364 - -
Trre4g01772 374 Pfam mTERF 193 344 IPR003690 GO:0003690|GO:0006355
Trre4g01772 374 Pfam mTERF 91 224 IPR003690 GO:0003690|GO:0006355
Trre4g01772 374 PANTHER CGI-12 PROTEIN-RELATED 50 343 IPR003690 GO:0003690|GO:0006355
Trre4g01772 374 Gene3D Transcription termination factor 3, mitochondrial 189 368 IPR038538 -
Trre4g01772 374 Gene3D Transcription termination factor 3, mitochondrial 59 188 IPR038538 -
Trre4g01772 374 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Trre4g01772 374 SMART mt_12 307 341 IPR003690 GO:0003690|GO:0006355
Trre4g01772 374 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Trre4g01772 374 SMART mt_12 208 236 IPR003690 GO:0003690|GO:0006355
Trre4g01772 374 SMART mt_12 139 170 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01772 Trre-Chr4 14733531 14735762 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre4g01772 mTERF 1.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01772 K15032 - mtr:25488156 329.717