Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01762 ATGTTGAAGTTCAATTCATGGCGCCACAAAACCCTAATCTATTATCTCAAGGGATTAACTTCCCCACAAACATTACAATCTCAAAACCCTAACCCTCTTTTCCACCATTACCCATCACCATTTTCTCTTCATTTCTGCACCAACACTTCCGATGATTCAAACCCATTTGCAGTCTCATACCTTATCAACAAATTTGGCTTCTCCTCACAATCTGCTTCCAGACTCACCTCCACCCACCGTCTTAAATTTAAAACTGCCAAAAACCCTGACTCTGTTCTTGCATTCTTTAGAAACCATGGTTTCTCAGACACCCAATTAAGTGATATCATTGCAAAATCACCAGACCTACTTTCCTGCAACCCCTCCAAAAGGGTGTTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGTGCTTCTACCTCTTACATTGTTGACATTGTCAGTAAGAACCCCAGAATCTTGTCTGCAAGCTTGAATAATTGTATAGTCCCAACCTATGAATTGGTTTATAGATTCTTGCAATCAGACAATGACACTATTGCTTGTGTAGTTCGAAATCGAAATTTACTTTGTGACAATCGTGTGGCAAATAACGTAACAATGCTGGTTGAGAATGGAGTGTCCCACTCAAACATTGCAAGATTGTTTCGGACACGGAGTATGGTACTCCACACACGTGACTTGTTGAAGTTGGTGGACGAAGTAAAGGATTTGGGGTTTAATCCTTCGAAAATAATTTTTTCTATAGCATTGATTGCCAAAGCATCGGTAACAAAAACATCGTGGAAAGAGAAAGTTGATGCTTTGAAGAAGTGGGGTTGGTCTGACGGAGATGCTCTTGAAGCATTTAGAAAGAAACCTTATTGTATGTTAACCTCCATTGATAAAATAAATTTAGTGATGAGCTTTTGGGTCAATCAGATGGGTTGGGATGCTATGGCCATTGCCAAAGCACCATATATATTGTCGCTAAGTTTGGAAAAAAGGATTATTCCAAGGGCTGCTGTTGTGCAATTTCTTCTCGATAAAGGTTTGAAAGATAAGATGGCAAGCCCAACTTATCCATTTGTAATGTCTGAGGAGTTGTTTCTTGATATGCTTAAAAAACGTTTTAAGGACGAGTCTTCTTATCTTTTAAAGTTGTATGAGCAAAAACTCAAGCTTGCGAATATCAGGGACTAG 1179 0.3902 MLKFNSWRHKTLIYYLKGLTSPQTLQSQNPNPLFHHYPSPFSLHFCTNTSDDSNPFAVSYLINKFGFSSQSASRLTSTHRLKFKTAKNPDSVLAFFRNHGFSDTQLSDIIAKSPDLLSCNPSKRVLPKFQFFLSKGASTSYIVDIVSKNPRILSASLNNCIVPTYELVYRFLQSDNDTIACVVRNRNLLCDNRVANNVTMLVENGVSHSNIARLFRTRSMVLHTRDLLKLVDEVKDLGFNPSKIIFSIALIAKASVTKTSWKEKVDALKKWGWSDGDALEAFRKKPYCMLTSIDKINLVMSFWVNQMGWDAMAIAKAPYILSLSLEKRIIPRAAVVQFLLDKGLKDKMASPTYPFVMSEELFLDMLKKRFKDESSYLLKLYEQKLKLANIRD 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01762 392 Gene3D Transcription termination factor 3, mitochondrial 163 374 IPR038538 -
Trre4g01762 392 FunFam Mitochondrial transcription termination factor-like 157 374 - -
Trre4g01762 392 SMART mt_12 311 345 IPR003690 GO:0003690|GO:0006355
Trre4g01762 392 SMART mt_12 279 310 IPR003690 GO:0003690|GO:0006355
Trre4g01762 392 SMART mt_12 107 138 IPR003690 GO:0003690|GO:0006355
Trre4g01762 392 SMART mt_12 242 274 IPR003690 GO:0003690|GO:0006355
Trre4g01762 392 SMART mt_12 212 240 IPR003690 GO:0003690|GO:0006355
Trre4g01762 392 SMART mt_12 143 174 IPR003690 GO:0003690|GO:0006355
Trre4g01762 392 SMART mt_12 179 207 IPR003690 GO:0003690|GO:0006355
Trre4g01762 392 PANTHER CGI-12 PROTEIN-RELATED 53 370 IPR003690 GO:0003690|GO:0006355
Trre4g01762 392 Pfam mTERF 254 362 IPR003690 GO:0003690|GO:0006355
Trre4g01762 392 Pfam mTERF 93 240 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01762 Trre-Chr4 14641105 14642283 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre4g01762 mTERF 1.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01762 K15032 - mtr:25488156 488.034