Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01760 ATGTTGAACTTCAATTCATGTCGCCATAGAACCCTAATCCATCTCAAAGCTTTAAAATCCCCAAATTCATCACCATTTTCTCTTCATTTCTCCACCAACACTTCCAATGATTCAACCCCATTTCCTGTCTCCTACCTCATCAACAATTTTGGAATCTCACCACCATCTGCTTCCAAACTCTGTTCCACCTACCGTTTTAAGTTTAAAACCACCCAAAAACCCAACAATGTTCTCACATTCTTTAGAAATCACGGTTTCTCCGATTCCCAACTTCGCGATATGATTCCAAAGGAACCTGAATTACTTTCCTGTAACCCCTCCAAAAGGGTGTTGCCAAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCTAAATCTGACATTGTTAAACTTGTCAGTAAGAACCCTATGGTCCTGTCTCCGAGCCTGGAGAATCATATAATCCCAACCTATGAATTGCTTTATAGATGCTTGCAATCTCATAAGGAAACTATTGATCGTGTAATTGGAAATCCGAGTTTATTTTATGACCGTAATGTGAAACGTAACATCAAAATGCTGATTGAGAATGGAGTGGCTGAAGGAAACATTGCAAGATTGCTTCGAGATCGTAGTAGGATATTCAAGTCTAAGGACCTTCTGAAGTTGGTGGAGGAATTGAAGGATTTGGGGTTTAATCCTTCGAAAACAAGTTTCGGTGTAGCATTTAAAGCTAAAACAACGGTTACCGAAACTTTGTGGAAAGAAAAAGTTGATGCCTTGAAGAAGTGGGGTTGGTCTGATGAAGATGCTCATGAAGCATTTAAAAAGAAACCTTATTGTATGTTAGTATCAATTGACAAGATAAATTTAGTGATGAGTTATTGGGTCGACAAGTTGGGTTGGGATGCTATGGCTATTGCCAAAAAACCATATATTTTGACGGTAAGTTTGGAAAAAAGGATCATTCCGAGGGCTGCAGTTGTGCAATTTCTTCTCGATAAAGGTTTGATAAATAAGATTGCAAGCTTAACGAATCTATTTGTAGTGCCTGAGAAGTTGTTTCTTGATATGCTTATAAAACGTTTTAAGAACGAGTCCTCTTATCTATTAAAGTTGTATGAGGAAAAACGAAATCATGCATAG 1122 0.3779 MLNFNSCRHRTLIHLKALKSPNSSPFSLHFSTNTSNDSTPFPVSYLINNFGISPPSASKLCSTYRFKFKTTQKPNNVLTFFRNHGFSDSQLRDMIPKEPELLSCNPSKRVLPKFQFLLSKGASKSDIVKLVSKNPMVLSPSLENHIIPTYELLYRCLQSHKETIDRVIGNPSLFYDRNVKRNIKMLIENGVAEGNIARLLRDRSRIFKSKDLLKLVEELKDLGFNPSKTSFGVAFKAKTTVTETLWKEKVDALKKWGWSDEDAHEAFKKKPYCMLVSIDKINLVMSYWVDKLGWDAMAIAKKPYILTVSLEKRIIPRAAVVQFLLDKGLINKIASLTNLFVVPEKLFLDMLIKRFKNESSYLLKLYEEKRNHA 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01760 373 PANTHER CGI-12 PROTEIN-RELATED 42 354 IPR003690 GO:0003690|GO:0006355
Trre4g01760 373 Pfam mTERF 246 347 IPR003690 GO:0003690|GO:0006355
Trre4g01760 373 Pfam mTERF 78 225 IPR003690 GO:0003690|GO:0006355
Trre4g01760 373 Gene3D Transcription termination factor 3, mitochondrial 160 360 IPR038538 -
Trre4g01760 373 SMART mt_12 264 295 IPR003690 GO:0003690|GO:0006355
Trre4g01760 373 SMART mt_12 92 123 IPR003690 GO:0003690|GO:0006355
Trre4g01760 373 SMART mt_12 296 330 IPR003690 GO:0003690|GO:0006355
Trre4g01760 373 SMART mt_12 197 225 IPR003690 GO:0003690|GO:0006355
Trre4g01760 373 SMART mt_12 128 159 IPR003690 GO:0003690|GO:0006355
Trre4g01760 373 FunFam Mitochondrial transcription termination factor-like 142 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01760 Trre-Chr4 14631648 14632769 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre4g01760 mTERF 9.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01760 K15032 - mtr:25488156 483.796