Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01757 ATGTTGAAGTTCAATTCATGGCGCCACAAAACCCTAATCTATTATCTCAATAAGACATTACAATCCCCAAACCCTAACCCTCTTTTCCAACATTACCCATCACTATTTTCTCTTCATTTCTGCACCAACACTTCCAATTATTCAACCTCATTTGCAGTTTCCTACCTCATCAACAATTTTGGGTTTTCCCCAAAATCTGCTTCCAAACTTTGCTCCACTTACAATGTTCGTTTCAAGACTGCTCAAAACCCTGATTCTGTTCTTAATTTCTTTAGAAACCATGGTTTCTCAGACACCCAATTACGTCATATCATTGCGAAATTACCATGGCTACTTTCCTGCAACCCCTCCAAAAGGGTATTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGTGCTTCTACCTCTTACATTGTTGACATTGTCTGTAAGAACCCTGTGGTCCTGTCTGCAAGCCTCAAGAATCGTATAGTCCCAGCCTATGAATCGGTTTATAGATACTTGCAATCAGACAAAGACACTATTGCTTTGTTGAATTACAATCCAATTATCTTTGGATCAAGTAATGTGGTGCATAACATCAAAGTGCTTACTGAGAGTGGAGTAACCGATTCAAATATTGCAAGATTGCTTCGCACTTGTACTAAGTTATTCTACAGAAAGGACTTGCATGAGTTGGTGGAGGAATTGAAAGATTTGGGGCTTGATCCTCCGCGGTCAATTTTCTCAATAGCATTGATGGCCAAATCATCGGTATCGGAAACCTTGTGGAAAGAGAAAGTTGATGCCTTTAAGAAATGGGGTTGGTCTGATGAAGATGCTCTTAAAGCATTTAGAAAGCAACCTCATTGTATGTTAACTTCCATCGATAAAATTAATTTAGTGATGAGCTATTGGGTTAATCAGTTGGGTTGGGATGCTATGGCCATTGCCAAAGTGCCAAGGGTTTTTGGGGCCAGTATGGAGCAAAGGATCATACCAAGAGCCTCGGTTGTGCAATATCTTTCGAAGAAAGGAGGAGTCTTCTTATCTATTAAAGCTTTACGAAGAAAAACTGAAGCTTGCACAAACCAAGGAAAAAACTGCCATGATATGAACAAATTTTCAGGTTCACACAATTTCCTGAGGAAGGCTTATGATTTTGATTGGTTAGTAATTACTCTGATTTCCAAGTGCTTTTCCTTTGGTTAA 1188 0.3906 MLKFNSWRHKTLIYYLNKTLQSPNPNPLFQHYPSLFSLHFCTNTSNYSTSFAVSYLINNFGFSPKSASKLCSTYNVRFKTAQNPDSVLNFFRNHGFSDTQLRHIIAKLPWLLSCNPSKRVLPKFQFFLSKGASTSYIVDIVCKNPVVLSASLKNRIVPAYESVYRYLQSDKDTIALLNYNPIIFGSSNVVHNIKVLTESGVTDSNIARLLRTCTKLFYRKDLHELVEELKDLGLDPPRSIFSIALMAKSSVSETLWKEKVDAFKKWGWSDEDALKAFRKQPHCMLTSIDKINLVMSYWVNQLGWDAMAIAKVPRVFGASMEQRIIPRASVVQYLSKKGGVFLSIKALRRKTEACTNQGKNCHDMNKFSGSHNFLRKAYDFDWLVITLISKCFSFG 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01757 395 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Trre4g01757 395 SMART mt_12 174 202 IPR003690 GO:0003690|GO:0006355
Trre4g01757 395 SMART mt_12 102 133 IPR003690 GO:0003690|GO:0006355
Trre4g01757 395 SMART mt_12 207 235 IPR003690 GO:0003690|GO:0006355
Trre4g01757 395 SMART mt_12 138 173 IPR003690 GO:0003690|GO:0006355
Trre4g01757 395 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Trre4g01757 395 PANTHER CGI-12 PROTEIN-RELATED 48 350 IPR003690 GO:0003690|GO:0006355
Trre4g01757 395 FunFam Mitochondrial transcription termination factor-like 152 348 - -
Trre4g01757 395 Pfam mTERF 221 338 IPR003690 GO:0003690|GO:0006355
Trre4g01757 395 Pfam mTERF 88 235 IPR003690 GO:0003690|GO:0006355
Trre4g01757 395 Gene3D Transcription termination factor 3, mitochondrial 162 352 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01757 Trre-Chr4 14602247 14604753 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre4g01757 mTERF 8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01757 K15032 - mtr:25488156 433.335