LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre4g01756	ATGTTGAGTTCACATTGCCATAGAACTTTTCTCTACTTCAACAAACCCTTAACTTTCTGCAACTACCCATCACTATTTTCTCTACATTTTTCCACCAAAACTTCAGATTCAACCTCTTTTGCGGTCTCTTACCTCATAAACAATTTTGGGTTTTCCCCACAATCTGCTTCCAAACTATGTTCCACTTACAATGTTCGTTTCAAAACCACCCAAAAACCTGATTCTGTTCTCAGCTTCTTTAGAAACCAAGGTTTACCAGATTCCCAATTACGCAGTATGATTTACAAAGCACCATGGTTACTTTCATGTGACCCCTCTAAAAGGGTTTTGCCAAAGTTTCAATTTTTACTTTCCAAAGGTGCTTCTAACTCTGACATTGTTAACCTTGTTACTAAGGCACCCATGGTCTTGTGTCCAAGCTTGGAGAATCATATAGTCCCAACCTATGAATTGTTGTATAGATTCTTGCAATCTGACAAGGATGTTATTGCTTGTGTAATTGGCAATCCAACTTTACTTACTCACCATTTTGTATCACATAACATTAGAGTGTTGATTGAGAATGGAGTCGTAGACTCAAACATTTCAAAATTGCTTCGGATGAAGAGCAGGGTAGTTATCATACCCACAAATGAATTTTTGAATGTTTTGGAGGAATTGAAGGATTTGGGGTTTAATCCTTCACAATCATTATTCTATGTAGCACTGATTGCCAAAATAACTGTAACAAAAACCTTGTGGGAAGAGAAAGTCGATGCCTTTAAGAAATGGAGTTGGTCGGATGAAGATGTTATAGAAGCATTTAAAAAGCAGCCTCATTGTATGTTAACATCCATTCATAAAATTAATTCAGTAATGAGCTTTTGGGTCGATCAGTTGGGTTGGGATGCTAGGGCCATTGTCAGACTACCAAGGGTTTTGGGGTCCAATCTAGAGAGAAGGATCATACCAAGGGCCGCTGTTCTGCAATATCTTCTGAAAAAAGTGACAAAACTGATACTATGTCATGAACAACTTTTCAGGTTCAAATGA	1032	0.3769	MLSSHCHRTFLYFNKPLTFCNYPSLFSLHFSTKTSDSTSFAVSYLINNFGFSPQSASKLCSTYNVRFKTTQKPDSVLSFFRNQGLPDSQLRSMIYKAPWLLSCDPSKRVLPKFQFLLSKGASNSDIVNLVTKAPMVLCPSLENHIVPTYELLYRFLQSDKDVIACVIGNPTLLTHHFVSHNIRVLIENGVVDSNISKLLRMKSRVVIIPTNEFLNVLEELKDLGFNPSQSLFYVALIAKITVTKTLWEEKVDAFKKWSWSDEDVIEAFKKQPHCMLTSIHKINSVMSFWVDQLGWDARAIVRLPRVLGSNLERRIIPRAAVLQYLLKKVTKLILCHEQLFRFK	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre4g01756	343	PANTHER	CGI-12 PROTEIN-RELATED	37	340	IPR003690	GO:0003690\|GO:0006355
	Trre4g01756	343	Gene3D	Transcription termination factor 3, mitochondrial	140	343	IPR038538	-
	Trre4g01756	343	SMART	mt_12	91	122	IPR003690	GO:0003690\|GO:0006355
	Trre4g01756	343	SMART	mt_12	127	158	IPR003690	GO:0003690\|GO:0006355
	Trre4g01756	343	SMART	mt_12	265	296	IPR003690	GO:0003690\|GO:0006355
	Trre4g01756	343	SMART	mt_12	297	328	IPR003690	GO:0003690\|GO:0006355
	Trre4g01756	343	SMART	mt_12	196	226	IPR003690	GO:0003690\|GO:0006355
	Trre4g01756	343	Pfam	mTERF	77	226	IPR003690	GO:0003690\|GO:0006355
	Trre4g01756	343	Pfam	mTERF	245	323	IPR003690	GO:0003690\|GO:0006355
	Trre4g01756	343	FunFam	Mitochondrial transcription termination factor-like	141	334	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre4g01756	Trre-Chr4	14596093	14598951	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Trre4g01756		mTERF	3.4e-15	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre4g01756	K15032		-	mtr:25488156	436.802