Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01752 ATGTTAACTACACATATTCATAGAGCTTTTATCTATCTCAAGAACCTAACTTTCCAACCAAAACCTTACCAATACCCATCACAATTTTCTCTACATTTTTGCACCAACACTTCAGATTCAAACTCTTTTGCAGTTTCCTACCTCATCAACAATTTTGGGTTTTCCCCAAAATCTGCATCCAAACTCTGCTCCACCTACCATCTTAGTTTTAAGACTTCCCAAAAACCTGACTCTGTTCTCACATTCTTTAGAAACAATGGTTTCTCTAACTCCCAACTTCGCGATATGATTACAAAGATACCAGGGTTACTCTCTTGTGACCCCTCTAAAAGGGTTTTGCCAAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCTAACTCTGACATTGTTGCCCTTGTCAGTAAGAACCCCAGAATCTTGTCTTCAAGCTTGGAAAATCATATAGTACCAACCTATGAATTGGTTTATAGATTCTTGCAATCAGATAAGGAAATAGTTGCTAGTGCAATGCGATATCCAGCTTTAATTTGTGAGCATCGTGTGCCACATAACATCACATTGTTGGTTGAGAATGGAGTTACAGATTCGAGCATTGCAAGATTGCTTCGGACCAATAGTTGGGTATTCCGGAAACGTGACATGCTGAAGTTAGTGGAGGAATTGAAGAATTTTGGGTTTAATCCTTCAAAAACAACATTTGGTATAGCATTGGAAGCCAAACTAACTGTAAACAAAACATTGTGGGAAGAGAAAGTTGATACCTTTAAGAAGTGGGGGTGGTCTGATGAAGATGTTCTAGAAGCATTTAGAAAGAAGCCTCACTGTATGTTGGTATCGATTAATAAAATTAATTTATTGATGAGCTTTTGGGTCAATCAGATGGGTTGGGATGTGCTTGCCCTTGTAAAAGGACCGTCGGTTTTTTCGAATAGTTTGGAAAAAAGCATCATTCCAAGGGCCTCAGTTGTGCAATTTCTGCTGAAGAAAGGTTTGCGAGAAAAGGATGCAAGCTTAACTTGTCCATTTTTAGTAAAAATTGAGTCTTGCACAAACCAGGGACAAAACCAGCAAGTCATGATTAAGATTTCAGCTATACTGGAAAAAGTTGCGGCATTCAAAATGGTTTCAACTTTCAAGTGGCGGTGCAGTTGCAACTGTGGTTACATTTCAAATACCGAAAGTGAAAATAATTGTGGGCAAATGCAGCGTAAATATGGTAGTTGTGTACTTTTCAACACCTCAACTCAAGAGATACTGAACCTCGATATTATTATGCTTGTAACTGTGGTTGTGGACTGGAATTATTCAAAACACTTTGCAGTTTGCATTATGGCATAG 1338 0.3819 MLTTHIHRAFIYLKNLTFQPKPYQYPSQFSLHFCTNTSDSNSFAVSYLINNFGFSPKSASKLCSTYHLSFKTSQKPDSVLTFFRNNGFSNSQLRDMITKIPGLLSCDPSKRVLPKFQFLLSKGASNSDIVALVSKNPRILSSSLENHIVPTYELVYRFLQSDKEIVASAMRYPALICEHRVPHNITLLVENGVTDSSIARLLRTNSWVFRKRDMLKLVEELKNFGFNPSKTTFGIALEAKLTVNKTLWEEKVDTFKKWGWSDEDVLEAFRKKPHCMLVSINKINLLMSFWVNQMGWDVLALVKGPSVFSNSLEKSIIPRASVVQFLLKKGLREKDASLTCPFLVKIESCTNQGQNQQVMIKISAILEKVAAFKMVSTFKWRCSCNCGYISNTESENNCGQMQRKYGSCVLFNTSTQEILNLDIIMLVTVVVDWNYSKHFAVCIMA 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01752 445 SMART mt_12 298 332 IPR003690 GO:0003690|GO:0006355
Trre4g01752 445 SMART mt_12 199 227 IPR003690 GO:0003690|GO:0006355
Trre4g01752 445 SMART mt_12 130 166 IPR003690 GO:0003690|GO:0006355
Trre4g01752 445 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Trre4g01752 445 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
Trre4g01752 445 Pfam mTERF 243 337 IPR003690 GO:0003690|GO:0006355
Trre4g01752 445 Pfam mTERF 80 227 IPR003690 GO:0003690|GO:0006355
Trre4g01752 445 FunFam Mitochondrial transcription termination factor-like 144 349 - -
Trre4g01752 445 PANTHER CGI-12 PROTEIN-RELATED 39 351 IPR003690 GO:0003690|GO:0006355
Trre4g01752 445 Gene3D Transcription termination factor 3, mitochondrial 159 352 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01752 Trre-Chr4 14574325 14576009 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre4g01752 mTERF 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01752 K15032 - mtr:25488156 464.922